Analysis of interatomic Contacts of Structural Units in PDB entry:
9LME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LME entry

There are 4 chains in PDB entry 9LME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 22GLN 240
B
 GLU 22GLN 240
C
 GLN 1SER 117
F
 GLN 3SER 119
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9LME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 103Right-handed 310
Helix 2
AA2
A
113 117Right-handed 310
Helix 3
AA3
B
59 63Right-handed 310
Helix 4
AA4
B
99 103Right-handed 310
Helix 5
AA5
B
113 117Right-handed 310
Helix 6
AA6
C
27 32Right-handed 310
Helix 7
AA7
C
62 65Right-handed 310
Helix 8
AA8
C
87 91Right-handed 310
Helix 9
AA9
F
30 34Right-handed 310
Helix 10
AB1
F
89 93Right-handed 310
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There are 12 sheets in PDB entry 9LME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
129 139parallel
Strand 3
A
118 125anti-parallel
Strand 4
A
64 69anti-parallel
Strand 5
A
75 80anti-parallel
Strand 6
A
83 87anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
107 109anti-parallel
Strand 3
A
93 94anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 150first strand
Strand 2
A
160 170anti-parallel
Strand 3
A
202 211anti-parallel
Strand 4
A
189 196anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
216 224anti-parallel
Strand 3
A
229 237anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
129 139parallel
Strand 3
B
118 125anti-parallel
Strand 4
B
64 69anti-parallel
Strand 5
B
75 80anti-parallel
Strand 6
B
83 87anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
107 109anti-parallel
Strand 3
B
93 94anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 150first strand
Strand 2
B
160 170anti-parallel
Strand 3
B
202 211anti-parallel
Strand 4
B
189 196anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 179first strand
Strand 2
B
216 224anti-parallel
Strand 3
B
229 237anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
111 115parallel
Strand 3
C
92 98anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
45 51anti-parallel
Strand 6
C
59 60anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 9first strand
Strand 2
F
20 26anti-parallel
Strand 3
F
80 85anti-parallel
Strand 4
F
70 75anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 14first strand
Strand 2
F
113 117parallel
Strand 3
F
94 100anti-parallel
Strand 4
F
36 41anti-parallel
Strand 5
F
47 53anti-parallel
Strand 6
F
61 62anti-parallel
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