Analysis of interatomic Contacts of Structural Units in PDB entry:
9LMN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LMN entry

There are 2 chains in PDB entry 9LMN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 35ALA 395
B
 GLY 35GLY 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9LMN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 75Right-handed alpha
Helix 2
AA2
A
102 111Right-handed alpha
Helix 3
AA3
A
112 119Right-handed alpha
Helix 4
AA4
A
120 123Right-handed 310
Helix 5
AA5
A
173 183Right-handed alpha
Helix 6
AA6
A
218 228Right-handed alpha
Helix 7
AA7
A
229 240Right-handed alpha
Helix 8
AA8
A
241 243Right-handed 310
Helix 9
AA9
A
251 262Right-handed alpha
Helix 10
AB1
A
293 311Right-handed alpha
Helix 11
AB2
A
337 340Right-handed 310
Helix 12
AB3
A
341 347Right-handed alpha
Helix 13
AB4
A
351 358Right-handed alpha
Helix 14
AB5
A
359 360Right-handed 310
Helix 15
AB6
A
361 365Right-handed 310
Helix 16
AB7
A
373 385Right-handed alpha
Helix 17
AB8
B
58 68Right-handed alpha
Helix 18
AB9
B
69 75Right-handed alpha
Helix 19
AC1
B
102 111Right-handed alpha
Helix 20
AC2
B
112 119Right-handed alpha
Helix 21
AC3
B
120 123Right-handed 310
Helix 22
AC4
B
173 184Right-handed alpha
Helix 23
AC5
B
218 228Right-handed alpha
Helix 24
AC6
B
229 238Right-handed alpha
Helix 25
AC7
B
251 262Right-handed alpha
Helix 26
AC8
B
294 309Right-handed alpha
Helix 27
AC9
B
337 340Right-handed 310
Helix 28
AD1
B
341 347Right-handed alpha
Helix 29
AD2
B
351 356Right-handed alpha
Helix 30
AD3
B
373 385Right-handed alpha
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There are 5 sheets in PDB entry 9LMN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
263 271anti-parallel
Strand 3
A
316 324anti-parallel
Strand 4
A
327 335anti-parallel
Strand 5
A
280 286anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
263 271anti-parallel
Strand 3
A
161 168anti-parallel
Strand 4
A
208 216anti-parallel
Strand 5
A
196 205anti-parallel
Strand 6
A
387 393anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 145first strand
Strand 2
B
126 141anti-parallel
Strand 3
B
46 54anti-parallel
Strand 4
B
93 100anti-parallel
Strand 5
B
79 87anti-parallel
Strand 6
A
126 141anti-parallel
Strand 7
A
46 54anti-parallel
Strand 8
A
93 100anti-parallel
Strand 9
A
79 87anti-parallel
Strand 10
B
126 141anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
263 271anti-parallel
Strand 3
B
316 323anti-parallel
Strand 4
B
328 335anti-parallel
Strand 5
B
280 287anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
263 271anti-parallel
Strand 3
B
161 168anti-parallel
Strand 4
B
208 216anti-parallel
Strand 5
B
196 205anti-parallel
Strand 6
B
387 393anti-parallel
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