Analysis of interatomic Contacts of Structural Units in PDB entry:
9LMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LMO entry

There are 4 chains in PDB entry 9LMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 4	LYS 228
K	GLN 1	SER 120
L	ASP 2	ARG 213
R	HIS 17	LEU 408

There are 35 helices in PDB entry 9LMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	31	35	Right-handed 310
Helix 2	AA2	H	65	68	Right-handed 310
Helix 3	AA3	H	77	79	Right-handed 310
Helix 4	AA4	H	90	94	Right-handed 310
Helix 5	AA5	H	107	112	Right-handed alpha
Helix 6	AA6	H	170	172	Right-handed 310
Helix 7	AA7	H	201	204	Right-handed 310
Helix 8	AA8	H	215	218	Right-handed 310
Helix 9	AA9	K	62	65	Right-handed 310
Helix 10	AB1	K	87	91	Right-handed 310
Helix 11	AB2	L	80	84	Right-handed 310
Helix 12	AB3	L	94	98	Right-handed 310
Helix 13	AB4	L	123	128	Right-handed alpha
Helix 14	AB5	L	185	189	Right-handed alpha
Helix 15	AB6	R	18	48	Right-handed alpha
Helix 16	AB7	R	51	68	Right-handed alpha
Helix 17	AB8	R	69	80	Right-handed alpha
Helix 18	AB9	R	86	121	Right-handed alpha
Helix 19	AC1	R	125	129	Right-handed 310
Helix 20	AC2	R	130	149	Right-handed alpha
Helix 21	AC3	R	150	155	Right-handed alpha
Helix 22	AC4	R	156	162	Right-handed alpha
Helix 23	AC5	R	180	188	Right-handed alpha
Helix 24	AC6	R	190	210	Right-handed alpha
Helix 25	AC7	R	214	232	Right-handed alpha
Helix 26	AC8	R	239	257	Right-handed alpha
Helix 27	AC9	R	262	289	Right-handed alpha
Helix 28	AD1	R	290	299	Right-handed alpha
Helix 29	AD2	R	299	306	Right-handed alpha
Helix 30	AD3	R	308	341	Right-handed alpha
Helix 31	AD4	R	341	354	Right-handed alpha
Helix 32	AD5	R	365	379	Right-handed alpha
Helix 33	AD6	R	381	386	Right-handed alpha
Helix 34	AD7	R	389	394	Right-handed alpha
Helix 35	AD8	R	395	408	Right-handed alpha

There are 15 sheets in PDB entry 9LMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	10	first strand
Strand 2	H	21	28	anti-parallel
Strand 3	H	81	86	anti-parallel
Strand 4	H	71	76	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	121	125	parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	36	42	anti-parallel
Strand 5	H	48	55	anti-parallel
Strand 6	H	60	63	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	15	first strand
Strand 2	H	121	125	parallel
Strand 3	H	95	102	anti-parallel
Strand 4	H	116	117	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	177	179	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	138	first strand
Strand 2	H	149	159	anti-parallel
Strand 3	H	190	199	anti-parallel
Strand 4	H	183	184	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	168	first strand
Strand 2	H	208	214	anti-parallel
Strand 3	H	219	225	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	7	first strand
Strand 2	K	17	23	anti-parallel
Strand 3	K	78	84	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	115	119	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	46	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	115	119	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	108	110	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	7	first strand
Strand 2	L	20	26	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	11	14	first strand
Strand 2	L	104	108	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	99	100	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	131	141	anti-parallel
Strand 3	L	175	184	anti-parallel
Strand 4	L	161	165	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	156	first strand
Strand 2	L	147	152	anti-parallel
Strand 3	L	193	199	anti-parallel
Strand 4	L	207	212	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	163	164	first strand
Strand 2	R	169	170	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LMO