Analysis of interatomic Contacts of Structural Units in PDB entry:
9LNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LNF entry

There is 1 chain in PDB entry 9LNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG -4SER 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 9LNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
138 144Right-handed alpha
Helix 2
AA2
A
161 163Right-handed 310
Helix 3
AA3
A
164 176Right-handed alpha
Helix 4
AA4
A
316 320Right-handed 310
Helix 5
AA5
A
363 370Right-handed alpha
Helix 6
AA6
A
408 415Right-handed alpha
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There are 5 sheets in PDB entry 9LNF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
249 256anti-parallel
Strand 3
A
112 127anti-parallel
Strand 4
A
209 225anti-parallel
Strand 5
A
230 233anti-parallel
Strand 6
A
294 298anti-parallel
Strand 7
A
289 291anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
249 256anti-parallel
Strand 3
A
112 127anti-parallel
Strand 4
A
209 225anti-parallel
Strand 5
A
105 108anti-parallel
Strand 6
A
312 313anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
150 154anti-parallel
Strand 3
A
182 185anti-parallel
Strand 4
A
188 191anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 263first strand
Strand 2
A
272 276anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 330first strand
Strand 2
A
336 346anti-parallel
Strand 3
A
357 361anti-parallel
Strand 4
A
399 407anti-parallel
Strand 5
A
387 396anti-parallel
Strand 6
A
381 384anti-parallel
Strand 7
A
323 330anti-parallel
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