Analysis of interatomic Contacts of Structural Units in PDB entry:
9LNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LNJ entry

There are 3 chains in PDB entry 9LNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 275ALA 636
B
 C 2 C 11
C
 A 2 G 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9LNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
289 293Right-handed 310
Helix 2
AA2
A
304 314Right-handed alpha
Helix 3
AA3
A
320 329Right-handed alpha
Helix 4
AA4
A
332 339Right-handed 310
Helix 5
AA5
A
347 356Right-handed alpha
Helix 6
AA6
A
378 387Right-handed alpha
Helix 7
AA7
A
396 400Right-handed 310
Helix 8
AA8
A
403 408Right-handed alpha
Helix 9
AA9
A
416 427Right-handed alpha
Helix 10
AB1
A
433 448Right-handed alpha
Helix 11
AB2
A
462 469Right-handed alpha
Helix 12
AB3
A
471 478Right-handed alpha
Helix 13
AB4
A
479 500Right-handed alpha
Helix 14
AB5
A
516 527Right-handed alpha
Helix 15
AB6
A
527 534Right-handed alpha
Helix 16
AB7
A
546 550Right-handed alpha
Helix 17
AB8
A
562 571Right-handed alpha
Helix 18
AB9
A
583 585Right-handed 310
Helix 19
AC1
A
586 594Right-handed alpha
Helix 20
AC2
A
604 616Right-handed alpha
Helix 21
AC3
A
622 635Right-handed alpha
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There are 4 sheets in PDB entry 9LNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
358 359anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 302first strand
Strand 2
A
510 513parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
366 370first strand
Strand 2
A
373 377anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
535 537first strand
Strand 2
A
551 553anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il