Analysis of interatomic Contacts of Structural Units in PDB entry:
9LOE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LOE entry

There are 3 chains in PDB entry 9LOE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 23	ASN 340
B	GLN 1	VAL 230
C	GLN 1	SER 216

There are 18 helices in PDB entry 9LOE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	53	Right-handed alpha
Helix 2	AA2	A	54	65	Right-handed alpha
Helix 3	AA3	A	75	80	Right-handed 310
Helix 4	AA4	A	97	104	Right-handed alpha
Helix 5	AA5	A	160	163	Right-handed 310
Helix 6	AA6	A	168	170	Right-handed 310
Helix 7	AA7	A	187	202	Right-handed alpha
Helix 8	AA8	A	267	277	Right-handed alpha
Helix 9	AA9	A	283	288	Right-handed alpha
Helix 10	AB1	B	89	93	Right-handed 310
Helix 11	AB2	B	146	148	Right-handed 310
Helix 12	AB3	B	175	177	Right-handed 310
Helix 13	AB4	B	206	208	Right-handed 310
Helix 14	AB5	B	220	223	Right-handed 310
Helix 15	AB6	C	81	85	Right-handed 310
Helix 16	AB7	C	125	131	Right-handed alpha
Helix 17	AB8	C	185	192	Right-handed alpha
Helix 18	AB9	C	211	215	Right-handed 310

There are 17 sheets in PDB entry 9LOE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	83	first strand
Strand 2	A	172	175	parallel
Strand 3	A	129	133	parallel
Strand 4	A	138	142	anti-parallel
Strand 5	A	109	111	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	149	first strand
Strand 2	A	156	158	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	180	first strand
Strand 2	A	327	337	anti-parallel
Strand 3	A	205	208	anti-parallel
Strand 4	A	211	212	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	180	first strand
Strand 2	A	327	337	anti-parallel
Strand 3	A	223	231	anti-parallel
Strand 4	A	238	240	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	248	first strand
Strand 2	A	313	318	anti-parallel
Strand 3	A	321	323	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	265	first strand
Strand 2	A	256	260	anti-parallel
Strand 3	A	304	307	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	17	24	anti-parallel
Strand 3	B	80	86	anti-parallel
Strand 4	B	70	75	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	126	130	parallel
Strand 3	B	94	103	anti-parallel
Strand 4	B	32	39	anti-parallel
Strand 5	B	45	51	anti-parallel
Strand 6	B	60	62	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	126	130	parallel
Strand 3	B	94	103	anti-parallel
Strand 4	B	121	122	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	143	first strand
Strand 2	B	154	164	anti-parallel
Strand 3	B	195	204	anti-parallel
Strand 4	B	182	184	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	151	first strand
Strand 2	B	154	164	anti-parallel
Strand 3	B	195	204	anti-parallel
Strand 4	B	188	189	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	173	first strand
Strand 2	B	214	219	anti-parallel
Strand 3	B	224	229	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	11	first strand
Strand 2	C	105	108	parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	36	40	anti-parallel
Strand 5	C	47	51	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	17	23	first strand
Strand 2	C	72	78	anti-parallel
Strand 3	C	64	69	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	134	143	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	163	165	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	134	143	anti-parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	169	170	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	159	first strand
Strand 2	C	149	154	anti-parallel
Strand 3	C	195	201	anti-parallel
Strand 4	C	204	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LOE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LOE