Analysis of interatomic Contacts of Structural Units in PDB entry:
9LOL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LOL entry

There are 3 chains in PDB entry 9LOL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 16	ASN 476
B	GLU 241	TYR 652
C	VAL 7	THR 178

There are 34 helices in PDB entry 9LOL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	43	Right-handed 310
Helix 2	AA2	A	54	73	Right-handed alpha
Helix 3	AA3	A	130	150	Right-handed alpha
Helix 4	AA4	A	151	176	Right-handed alpha
Helix 5	AA5	A	177	179	Right-handed 310
Helix 6	AA6	A	185	191	Right-handed alpha
Helix 7	AA7	A	199	217	Right-handed alpha
Helix 8	AA8	A	237	251	Right-handed alpha
Helix 9	AA9	A	253	257	Right-handed 310
Helix 10	AB1	A	335	365	Right-handed alpha
Helix 11	AB2	A	407	421	Right-handed alpha
Helix 12	AB3	A	459	474	Right-handed alpha
Helix 13	AB4	B	242	250	Right-handed alpha
Helix 14	AB5	B	275	291	Right-handed alpha
Helix 15	AB6	B	325	345	Right-handed alpha
Helix 16	AB7	B	345	356	Right-handed alpha
Helix 17	AB8	B	360	364	Right-handed 310
Helix 18	AB9	B	368	382	Right-handed alpha
Helix 19	AC1	B	382	388	Right-handed alpha
Helix 20	AC2	B	396	410	Right-handed alpha
Helix 21	AC3	B	438	450	Right-handed alpha
Helix 22	AC4	B	453	458	Right-handed 310
Helix 23	AC5	B	500	517	Right-handed alpha
Helix 24	AC6	B	518	529	Right-handed alpha
Helix 25	AC7	B	533	537	Right-handed 310
Helix 26	AC8	B	566	585	Right-handed alpha
Helix 27	AC9	B	622	645	Right-handed alpha
Helix 28	AD1	C	23	28	Right-handed alpha
Helix 29	AD2	C	67	72	Right-handed 310
Helix 30	AD3	C	73	78	Right-handed alpha
Helix 31	AD4	C	94	111	Right-handed alpha
Helix 32	AD5	C	114	118	Right-handed 310
Helix 33	AD6	C	136	146	Right-handed alpha
Helix 34	AD7	C	161	172	Right-handed alpha

There are 7 sheets in PDB entry 9LOL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	110	115	anti-parallel
Strand 3	A	118	124	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	49	first strand
Strand 2	A	24	30	anti-parallel
Strand 3	A	100	107	anti-parallel
Strand 4	A	89	97	anti-parallel
Strand 5	A	81	86	anti-parallel
Strand 6	B	296	301	anti-parallel
Strand 7	B	304	311	anti-parallel
Strand 8	B	314	320	anti-parallel
Strand 9	B	253	259	anti-parallel
Strand 10	B	264	267	anti-parallel

Back to list of sheets
Back to top of page

There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	387	390	parallel
Strand 3	A	377	382	anti-parallel
Strand 4	A	447	453	anti-parallel
Strand 5	A	438	444	anti-parallel
Strand 6	A	427	433	anti-parallel
Strand 7	B	591	597	anti-parallel
Strand 8	B	602	607	anti-parallel
Strand 9	B	611	617	anti-parallel
Strand 10	B	542	549	anti-parallel
Strand 11	B	554	556	anti-parallel
Strand 12	B	390	391	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	234	first strand
Strand 2	A	220	227	anti-parallel
Strand 3	A	322	329	anti-parallel
Strand 4	A	310	319	anti-parallel
Strand 5	A	281	284	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	234	first strand
Strand 2	A	220	227	anti-parallel
Strand 3	A	322	329	anti-parallel
Strand 4	A	310	319	anti-parallel
Strand 5	A	300	303	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	464	first strand
Strand 2	B	475	481	anti-parallel
Strand 3	B	488	494	anti-parallel
Strand 4	B	415	422	anti-parallel
Strand 5	B	426	431	anti-parallel
Strand 6	B	650	651	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	37	first strand
Strand 2	C	43	52	anti-parallel
Strand 3	C	55	64	anti-parallel
Strand 4	C	8	14	parallel
Strand 5	C	83	89	parallel
Strand 6	C	120	125	parallel
Strand 7	C	151	154	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LOL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LOL