Analysis of interatomic Contacts of Structural Units in PDB entry:
9LOV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LOV entry

There are 5 chains in PDB entry 9LOV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Y	U 1	U 45
X	A 1	A 45
A	LEU 3	LEU 672
B	GLU 303	SER 1016
C	GLU 305	LEU 1013

There are 84 helices in PDB entry 9LOV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	11	Right-handed alpha
Helix 2	AA2	A	11	16	Right-handed alpha
Helix 3	AA3	A	29	45	Right-handed alpha
Helix 4	AA4	A	56	71	Right-handed alpha
Helix 5	AA5	A	89	97	Right-handed alpha
Helix 6	AA6	A	104	112	Right-handed alpha
Helix 7	AA7	A	133	136	Right-handed 310
Helix 8	AA8	A	140	155	Right-handed alpha
Helix 9	AA9	A	177	193	Right-handed alpha
Helix 10	AB1	A	227	245	Right-handed alpha
Helix 11	AB2	A	255	273	Right-handed alpha
Helix 12	AB3	A	274	297	Right-handed alpha
Helix 13	AB4	A	298	317	Right-handed alpha
Helix 14	AB5	A	321	334	Right-handed alpha
Helix 15	AB6	A	334	345	Right-handed alpha
Helix 16	AB7	A	348	364	Right-handed alpha
Helix 17	AB8	A	376	389	Right-handed alpha
Helix 18	AB9	A	390	396	Right-handed alpha
Helix 19	AC1	A	416	430	Right-handed alpha
Helix 20	AC2	A	439	443	Right-handed 310
Helix 21	AC3	A	461	472	Right-handed alpha
Helix 22	AC4	A	487	513	Right-handed alpha
Helix 23	AC5	A	514	540	Right-handed alpha
Helix 24	AC6	A	573	575	Right-handed 310
Helix 25	AC7	A	583	587	Right-handed alpha
Helix 26	AC8	A	651	655	Right-handed 310
Helix 27	AC9	A	663	669	Right-handed alpha
Helix 28	AD1	B	309	321	Right-handed alpha
Helix 29	AD2	B	334	353	Right-handed alpha
Helix 30	AD3	B	365	376	Right-handed alpha
Helix 31	AD4	B	376	382	Right-handed alpha
Helix 32	AD5	B	394	398	Right-handed 310
Helix 33	AD6	B	399	407	Right-handed alpha
Helix 34	AD7	B	414	423	Right-handed alpha
Helix 35	AD8	B	433	437	Right-handed 310
Helix 36	AD9	B	452	474	Right-handed alpha
Helix 37	AE1	B	498	513	Right-handed alpha
Helix 38	AE2	B	524	532	Right-handed alpha
Helix 39	AE3	B	548	566	Right-handed alpha
Helix 40	AE4	B	575	593	Right-handed alpha
Helix 41	AE5	B	594	617	Right-handed alpha
Helix 42	AE6	B	618	638	Right-handed alpha
Helix 43	AE7	B	670	683	Right-handed alpha
Helix 44	AE8	B	683	692	Right-handed alpha
Helix 45	AE9	B	698	715	Right-handed alpha
Helix 46	AF1	B	727	741	Right-handed alpha
Helix 47	AF2	B	741	747	Right-handed alpha
Helix 48	AF3	B	767	780	Right-handed alpha
Helix 49	AF4	B	790	794	Right-handed 310
Helix 50	AF5	B	812	822	Right-handed alpha
Helix 51	AF6	B	839	863	Right-handed alpha
Helix 52	AF7	B	865	891	Right-handed alpha
Helix 53	AF8	B	899	901	Right-handed 310
Helix 54	AF9	B	932	937	Right-handed alpha
Helix 55	AG1	B	944	951	Right-handed alpha
Helix 56	AG2	B	983	985	Right-handed 310
Helix 57	AG3	C	309	321	Right-handed alpha
Helix 58	AG4	C	334	351	Right-handed alpha
Helix 59	AG5	C	365	376	Right-handed alpha
Helix 60	AG6	C	376	382	Right-handed alpha
Helix 61	AG7	C	394	398	Right-handed 310
Helix 62	AG8	C	399	407	Right-handed alpha
Helix 63	AG9	C	414	421	Right-handed alpha
Helix 64	AH1	C	433	437	Right-handed 310
Helix 65	AH2	C	444	448	Right-handed 310
Helix 66	AH3	C	452	474	Right-handed alpha
Helix 67	AH4	C	498	514	Right-handed alpha
Helix 68	AH5	C	524	532	Right-handed alpha
Helix 69	AH6	C	548	565	Right-handed alpha
Helix 70	AH7	C	575	593	Right-handed alpha
Helix 71	AH8	C	594	617	Right-handed alpha
Helix 72	AH9	C	618	637	Right-handed alpha
Helix 73	AI1	C	670	682	Right-handed alpha
Helix 74	AI2	C	683	693	Right-handed alpha
Helix 75	AI3	C	698	715	Right-handed alpha
Helix 76	AI4	C	727	741	Right-handed alpha
Helix 77	AI5	C	741	747	Right-handed alpha
Helix 78	AI6	C	767	781	Right-handed alpha
Helix 79	AI7	C	790	794	Right-handed 310
Helix 80	AI8	C	812	823	Right-handed alpha
Helix 81	AI9	C	839	863	Right-handed alpha
Helix 82	AJ1	C	865	891	Right-handed alpha
Helix 83	AJ2	C	932	939	Right-handed alpha
Helix 84	AJ3	C	1002	1006	Right-handed 310

There are 15 sheets in PDB entry 9LOV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	99	103	parallel
Strand 3	A	50	54	parallel
Strand 4	A	127	131	parallel
Strand 5	A	162	167	parallel
Strand 6	A	20	23	parallel
Strand 7	A	196	198	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	218	first strand
Strand 2	A	478	482	parallel
Strand 3	A	452	456	parallel
Strand 4	A	370	373	parallel
Strand 5	A	434	437	parallel
Strand 6	A	400	403	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	562	565	first strand
Strand 2	A	553	556	anti-parallel
Strand 3	A	638	641	anti-parallel
Strand 4	A	646	647	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	572	first strand
Strand 2	A	576	579	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	588	591	first strand
Strand 2	A	609	612	anti-parallel
Strand 3	A	618	625	anti-parallel
Strand 4	A	628	633	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	390	first strand
Strand 2	B	409	413	parallel
Strand 3	B	359	363	parallel
Strand 4	B	439	442	parallel
Strand 5	B	483	488	parallel
Strand 6	B	325	328	parallel
Strand 7	B	517	519	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	542	first strand
Strand 2	B	829	835	parallel
Strand 3	B	803	807	parallel
Strand 4	B	721	724	parallel
Strand 5	B	785	788	parallel
Strand 6	B	751	754	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	916	first strand
Strand 2	B	903	907	anti-parallel
Strand 3	B	987	991	anti-parallel
Strand 4	B	997	998	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	920	923	first strand
Strand 2	B	927	930	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	939	941	first strand
Strand 2	B	959	962	anti-parallel
Strand 3	B	967	974	anti-parallel
Strand 4	B	977	980	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	390	first strand
Strand 2	C	409	413	parallel
Strand 3	C	359	363	parallel
Strand 4	C	439	442	parallel
Strand 5	C	483	488	parallel
Strand 6	C	325	328	parallel
Strand 7	C	517	519	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	542	first strand
Strand 2	C	829	835	parallel
Strand 3	C	803	807	parallel
Strand 4	C	721	724	parallel
Strand 5	C	785	788	parallel
Strand 6	C	751	754	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	913	916	first strand
Strand 2	C	903	907	anti-parallel
Strand 3	C	987	991	anti-parallel
Strand 4	C	997	998	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	920	923	first strand
Strand 2	C	927	930	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	940	941	first strand
Strand 2	C	959	961	anti-parallel
Strand 3	C	967	974	anti-parallel
Strand 4	C	977	982	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LOV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LOV