Analysis of interatomic Contacts of Structural Units in PDB entry:
9LOX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LOX entry

There are 11 chains in PDB entry 9LOX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 34	GLU 134
B	ARG 23	GLY 101
C	THR 15	PRO 109
D	ARG 37	GLN 130
E	HIS 40	GLU 134
F	ARG 23	GLY 102
G	ALA 13	PRO 117
H	LYS 38	THR 129
I	G 3	A 144
J	T 2	C 143
K	ASN 243	GLN 816

There are 61 helices in PDB entry 9LOX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	56	Right-handed alpha
Helix 2	AA2	A	64	78	Right-handed alpha
Helix 3	AA3	A	86	115	Right-handed alpha
Helix 4	AA4	A	121	132	Right-handed alpha
Helix 5	AA5	B	24	29	Right-handed 310
Helix 6	AA6	B	30	42	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	93	Right-handed alpha
Helix 9	AA9	C	16	22	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	45	73	Right-handed alpha
Helix 12	AB3	C	79	89	Right-handed alpha
Helix 13	AB4	C	90	97	Right-handed alpha
Helix 14	AB5	D	41	53	Right-handed alpha
Helix 15	AB6	D	59	88	Right-handed alpha
Helix 16	AB7	D	94	106	Right-handed alpha
Helix 17	AB8	D	107	130	Right-handed alpha
Helix 18	AB9	E	43	58	Right-handed alpha
Helix 19	AC1	E	64	78	Right-handed alpha
Helix 20	AC2	E	86	115	Right-handed alpha
Helix 21	AC3	E	121	132	Right-handed alpha
Helix 22	AC4	F	24	29	Right-handed 310
Helix 23	AC5	F	30	42	Right-handed alpha
Helix 24	AC6	F	49	76	Right-handed alpha
Helix 25	AC7	F	82	94	Right-handed alpha
Helix 26	AC8	G	16	22	Right-handed alpha
Helix 27	AC9	G	26	37	Right-handed alpha
Helix 28	AD1	G	45	73	Right-handed alpha
Helix 29	AD2	G	79	90	Right-handed alpha
Helix 30	AD3	G	90	97	Right-handed alpha
Helix 31	AD4	H	41	53	Right-handed alpha
Helix 32	AD5	H	59	88	Right-handed alpha
Helix 33	AD6	H	94	106	Right-handed alpha
Helix 34	AD7	H	107	129	Right-handed alpha
Helix 35	AD8	K	248	266	Right-handed alpha
Helix 36	AD9	K	300	304	Right-handed 310
Helix 37	AE1	K	305	318	Right-handed alpha
Helix 38	AE2	K	335	349	Right-handed alpha
Helix 39	AE3	K	364	376	Right-handed alpha
Helix 40	AE4	K	427	438	Right-handed alpha
Helix 41	AE5	K	446	457	Right-handed alpha
Helix 42	AE6	K	468	472	Right-handed 310
Helix 43	AE7	K	477	485	Right-handed alpha
Helix 44	AE8	K	503	514	Right-handed alpha
Helix 45	AE9	K	520	535	Right-handed alpha
Helix 46	AF1	K	541	560	Right-handed alpha
Helix 47	AF2	K	567	572	Right-handed alpha
Helix 48	AF3	K	588	601	Right-handed alpha
Helix 49	AF4	K	602	609	Right-handed alpha
Helix 50	AF5	K	614	618	Right-handed 310
Helix 51	AF6	K	620	625	Right-handed alpha
Helix 52	AF7	K	628	632	Right-handed 310
Helix 53	AF8	K	635	640	Right-handed alpha
Helix 54	AF9	K	647	650	Right-handed 310
Helix 55	AG1	K	651	668	Right-handed alpha
Helix 56	AG2	K	677	695	Right-handed alpha
Helix 57	AG3	K	695	700	Right-handed alpha
Helix 58	AG4	K	716	728	Right-handed alpha
Helix 59	AG5	K	738	744	Right-handed alpha
Helix 60	AG6	K	761	770	Right-handed alpha
Helix 61	AG7	K	790	812	Right-handed alpha

There are 13 sheets in PDB entry 9LOX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	92	93	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	57	58	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	120	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	92	93	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	57	58	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	288	289	first strand
Strand 2	K	295	296	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	381	383	first strand
Strand 2	K	441	445	parallel
Strand 3	K	356	360	parallel
Strand 4	K	463	466	parallel
Strand 5	K	490	494	parallel
Strand 6	K	326	328	parallel
Strand 7	K	563	565	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	578	585	first strand
Strand 2	K	781	788	parallel
Strand 3	K	752	755	parallel
Strand 4	K	671	675	parallel
Strand 5	K	735	737	parallel
Strand 6	K	708	709	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LOX

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LOX