Analysis of interatomic Contacts of Structural Units in PDB entry:
9LP3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LP3 entry

There are 2 chains in PDB entry 9LP3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 16	GLU 557
B	ASP 15	LYS 558

There are 23 helices in PDB entry 9LP3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	43	Right-handed 310
Helix 2	AA2	A	85	89	Right-handed 310
Helix 3	AA3	A	112	122	Right-handed alpha
Helix 4	AA4	A	131	135	Right-handed 310
Helix 5	AA5	A	136	140	Right-handed 310
Helix 6	AA6	A	268	273	Right-handed alpha
Helix 7	AA7	A	348	354	Right-handed alpha
Helix 8	AA8	A	391	394	Right-handed 310
Helix 9	AA9	A	413	418	Right-handed alpha
Helix 10	AB1	A	493	497	Right-handed 310
Helix 11	AB2	A	519	530	Right-handed alpha
Helix 12	AB3	A	545	557	Right-handed alpha
Helix 13	AB4	B	35	43	Right-handed 310
Helix 14	AB5	B	85	89	Right-handed 310
Helix 15	AB6	B	112	122	Right-handed alpha
Helix 16	AB7	B	131	135	Right-handed 310
Helix 17	AB8	B	136	140	Right-handed 310
Helix 18	AB9	B	268	274	Right-handed alpha
Helix 19	AC1	B	391	394	Right-handed 310
Helix 20	AC2	B	413	417	Right-handed 310
Helix 21	AC3	B	493	496	Right-handed 310
Helix 22	AC4	B	519	530	Right-handed alpha
Helix 23	AC5	B	545	558	Right-handed alpha

There are 19 sheets in PDB entry 9LP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	19	20	first strand
Strand 2	A	23	24	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	518	first strand
Strand 2	A	66	73	anti-parallel
Strand 3	A	91	99	anti-parallel
Strand 4	A	102	109	anti-parallel
Strand 5	A	47	51	anti-parallel
Strand 6	B	48	51	anti-parallel
Strand 7	B	102	109	anti-parallel
Strand 8	B	91	99	anti-parallel
Strand 9	B	66	73	anti-parallel
Strand 10	B	514	518	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	500	503	anti-parallel
Strand 3	A	483	490	anti-parallel
Strand 4	A	470	478	anti-parallel
Strand 5	A	453	455	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	58	first strand
Strand 2	A	500	503	anti-parallel
Strand 3	A	483	490	anti-parallel
Strand 4	A	470	478	anti-parallel
Strand 5	A	459	462	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	157	161	anti-parallel
Strand 3	A	168	170	anti-parallel
Strand 4	A	177	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	198	first strand
Strand 2	A	205	210	anti-parallel
Strand 3	A	222	228	anti-parallel
Strand 4	A	234	241	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	257	262	anti-parallel
Strand 3	A	287	293	anti-parallel
Strand 4	A	301	305	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	267	first strand
Strand 2	A	279	281	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	318	first strand
Strand 2	A	324	331	anti-parallel
Strand 3	A	359	364	anti-parallel
Strand 4	A	378	380	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	389	first strand
Strand 2	A	400	405	anti-parallel
Strand 3	A	427	432	anti-parallel
Strand 4	A	443	448	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	19	20	first strand
Strand 2	B	23	24	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	498	503	anti-parallel
Strand 3	B	483	490	anti-parallel
Strand 4	B	470	478	anti-parallel
Strand 5	B	453	455	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	58	first strand
Strand 2	B	498	503	anti-parallel
Strand 3	B	483	490	anti-parallel
Strand 4	B	470	478	anti-parallel
Strand 5	B	459	462	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	168	170	anti-parallel
Strand 4	B	177	180	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	198	first strand
Strand 2	B	205	210	anti-parallel
Strand 3	B	222	228	anti-parallel
Strand 4	B	234	241	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	257	262	anti-parallel
Strand 3	B	287	293	anti-parallel
Strand 4	B	301	305	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	267	first strand
Strand 2	B	279	281	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	318	first strand
Strand 2	B	324	331	anti-parallel
Strand 3	B	359	364	anti-parallel
Strand 4	B	378	380	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	389	first strand
Strand 2	B	400	405	anti-parallel
Strand 3	B	427	432	anti-parallel
Strand 4	B	443	448	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LP3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LP3