Analysis of interatomic Contacts of Structural Units in PDB entry:
9LPC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LPC entry

There are 4 chains in PDB entry 9LPC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3HIS 340
B
 LYS 3ARG 334
C
 A 1 G 73
D
 A 1 G 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9LPC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 24Right-handed alpha
Helix 2
AA2
A
24 30Right-handed alpha
Helix 3
AA3
A
45 49Right-handed 310
Helix 4
AA4
A
52 71Right-handed alpha
Helix 5
AA5
A
83 85Right-handed 310
Helix 6
AA6
A
86 97Right-handed alpha
Helix 7
AA7
A
100 106Right-handed alpha
Helix 8
AA8
A
107 113Right-handed alpha
Helix 9
AA9
A
122 139Right-handed alpha
Helix 10
AB1
A
150 169Right-handed alpha
Helix 11
AB2
A
202 206Right-handed 310
Helix 12
AB3
A
212 222Right-handed alpha
Helix 13
AB4
A
240 255Right-handed alpha
Helix 14
AB5
A
257 265Right-handed alpha
Helix 15
AB6
A
269 298Right-handed alpha
Helix 16
AB7
A
298 329Right-handed alpha
Helix 17
AB8
B
17 24Right-handed alpha
Helix 18
AB9
B
24 30Right-handed alpha
Helix 19
AC1
B
42 47Right-handed alpha
Helix 20
AC2
B
52 71Right-handed alpha
Helix 21
AC3
B
83 85Right-handed 310
Helix 22
AC4
B
86 97Right-handed alpha
Helix 23
AC5
B
100 107Right-handed alpha
Helix 24
AC6
B
107 114Right-handed alpha
Helix 25
AC7
B
122 138Right-handed alpha
Helix 26
AC8
B
150 169Right-handed alpha
Helix 27
AC9
B
212 222Right-handed alpha
Helix 28
AD1
B
240 255Right-handed alpha
Helix 29
AD2
B
257 265Right-handed alpha
Helix 30
AD3
B
270 285Right-handed alpha
Helix 31
AD4
B
285 298Right-handed alpha
Helix 32
AD5
B
298 329Right-handed alpha
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There are 5 sheets in PDB entry 9LPC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 10first strand
Strand 2
A
36 41parallel
Strand 3
A
78 81parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
176 177parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 10first strand
Strand 2
B
36 41parallel
Strand 3
B
78 81parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
176 177parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
191 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il