Analysis of interatomic Contacts of Structural Units in PDB entry:
9LPG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LPG entry

There are 4 chains in PDB entry 9LPG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2SER 489
E
 GLY 14ALA 422
B
 ARG 2SER 489
F
 GLY 14ALA 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 9LPG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 24Right-handed alpha
Helix 2
AA2
A
36 44Right-handed 310
Helix 3
AA3
A
46 67Right-handed alpha
Helix 4
AA4
A
79 91Right-handed alpha
Helix 5
AA5
A
103 120Right-handed alpha
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
148 157Right-handed alpha
Helix 8
AA8
A
190 192Right-handed 310
Helix 9
AA9
A
193 198Right-handed alpha
Helix 10
AB1
A
199 203Right-handed 310
Helix 11
AB2
A
207 220Right-handed alpha
Helix 12
AB3
A
225 230Right-handed alpha
Helix 13
AB4
A
241 247Right-handed alpha
Helix 14
AB5
A
251 269Right-handed alpha
Helix 15
AB6
A
271 298Right-handed alpha
Helix 16
AB7
A
318 327Right-handed alpha
Helix 17
AB8
A
332 346Right-handed alpha
Helix 18
AB9
A
349 363Right-handed alpha
Helix 19
AC1
A
367 379Right-handed alpha
Helix 20
AC2
A
383 395Right-handed alpha
Helix 21
AC3
A
409 418Right-handed alpha
Helix 22
AC4
A
421 428Right-handed alpha
Helix 23
AC5
A
429 432Right-handed 310
Helix 24
AC6
A
441 445Right-handed 310
Helix 25
AC7
A
446 453Right-handed alpha
Helix 26
AC8
A
467 488Right-handed alpha
Helix 27
AC9
E
38 44Right-handed alpha
Helix 28
AD1
E
62 68Right-handed alpha
Helix 29
AD2
E
69 77Right-handed alpha
Helix 30
AD3
E
78 82Right-handed 310
Helix 31
AD4
E
117 123Right-handed alpha
Helix 32
AD5
E
128 134Right-handed alpha
Helix 33
AD6
E
142 146Right-handed 310
Helix 34
AD7
E
173 189Right-handed alpha
Helix 35
AD8
E
243 252Right-handed alpha
Helix 36
AD9
E
262 280Right-handed alpha
Helix 37
AE1
E
291 295Right-handed 310
Helix 38
AE2
E
315 319Right-handed 310
Helix 39
AE3
E
320 331Right-handed alpha
Helix 40
AE4
E
335 342Right-handed alpha
Helix 41
AE5
E
409 422Right-handed alpha
Helix 42
AE6
B
16 25Right-handed alpha
Helix 43
AE7
B
36 44Right-handed 310
Helix 44
AE8
B
46 67Right-handed alpha
Helix 45
AE9
B
79 92Right-handed alpha
Helix 46
AF1
B
103 120Right-handed alpha
Helix 47
AF2
B
148 157Right-handed alpha
Helix 48
AF3
B
190 192Right-handed 310
Helix 49
AF4
B
193 199Right-handed alpha
Helix 50
AF5
B
200 203Right-handed 310
Helix 51
AF6
B
207 220Right-handed alpha
Helix 52
AF7
B
225 230Right-handed alpha
Helix 53
AF8
B
241 247Right-handed alpha
Helix 54
AF9
B
251 269Right-handed alpha
Helix 55
AG1
B
271 298Right-handed alpha
Helix 56
AG2
B
318 327Right-handed alpha
Helix 57
AG3
B
332 346Right-handed alpha
Helix 58
AG4
B
349 363Right-handed alpha
Helix 59
AG5
B
367 379Right-handed alpha
Helix 60
AG6
B
383 395Right-handed alpha
Helix 61
AG7
B
409 418Right-handed alpha
Helix 62
AG8
B
421 428Right-handed alpha
Helix 63
AG9
B
429 432Right-handed 310
Helix 64
AH1
B
441 445Right-handed 310
Helix 65
AH2
B
446 453Right-handed alpha
Helix 66
AH3
B
468 487Right-handed alpha
Helix 67
AH4
F
38 44Right-handed alpha
Helix 68
AH5
F
62 68Right-handed alpha
Helix 69
AH6
F
69 77Right-handed alpha
Helix 70
AH7
F
78 82Right-handed 310
Helix 71
AH8
F
117 123Right-handed alpha
Helix 72
AH9
F
129 134Right-handed alpha
Helix 73
AI1
F
142 146Right-handed 310
Helix 74
AI2
F
170 172Right-handed 310
Helix 75
AI3
F
173 190Right-handed alpha
Helix 76
AI4
F
242 251Right-handed alpha
Helix 77
AI5
F
262 280Right-handed alpha
Helix 78
AI6
F
291 295Right-handed 310
Helix 79
AI7
F
320 331Right-handed alpha
Helix 80
AI8
F
335 342Right-handed alpha
Helix 81
AI9
F
410 422Right-handed alpha
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There are 9 sheets in PDB entry 9LPG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
29 35parallel
Strand 3
A
3 7parallel
Strand 4
A
95 99parallel
Strand 5
A
123 127parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
16 24first strand
Strand 2
E
107 114anti-parallel
Strand 3
E
149 156parallel
Strand 4
E
161 168anti-parallel
Strand 5
E
48 55anti-parallel
Strand 6
E
376 382anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
34 36first strand
Strand 2
E
98 101anti-parallel
Strand 3
E
83 86anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
217 218first strand
Strand 2
E
346 347anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
235 241first strand
Strand 2
E
401 407anti-parallel
Strand 3
E
389 393anti-parallel
Strand 4
E
354 358parallel
Strand 5
E
284 289parallel
Strand 6
E
305 310anti-parallel
Strand 7
E
333 334anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 76first strand
Strand 2
B
29 35parallel
Strand 3
B
3 7parallel
Strand 4
B
95 99parallel
Strand 5
B
123 127parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
17 24first strand
Strand 2
F
107 114anti-parallel
Strand 3
F
149 156parallel
Strand 4
F
161 168anti-parallel
Strand 5
F
48 55anti-parallel
Strand 6
F
376 382anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
34 35first strand
Strand 2
F
98 101anti-parallel
Strand 3
F
83 86anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
234 241first strand
Strand 2
F
401 408anti-parallel
Strand 3
F
389 394anti-parallel
Strand 4
F
354 358parallel
Strand 5
F
284 289parallel
Strand 6
F
307 310anti-parallel
Strand 7
F
333 334anti-parallel
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