Analysis of interatomic Contacts of Structural Units in PDB entry:
9LPZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LPZ entry

There are 4 chains in PDB entry 9LPZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 71	LEU 594
D	ALA 71	LEU 594
B	ASP 77	PRO 978
C	ASP 77	PRO 978

There are142 helices in PDB entry 9LPZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	107	Right-handed 310
Helix 2	AA2	A	117	131	Right-handed alpha
Helix 3	AA3	A	163	167	Right-handed 310
Helix 4	AA4	A	168	174	Right-handed alpha
Helix 5	AA5	A	175	177	Right-handed 310
Helix 6	AA6	A	193	215	Right-handed alpha
Helix 7	AA7	A	217	228	Right-handed alpha
Helix 8	AA8	A	229	249	Right-handed alpha
Helix 9	AA9	A	253	257	Right-handed 310
Helix 10	AB1	A	258	263	Right-handed alpha
Helix 11	AB2	A	265	276	Right-handed alpha
Helix 12	AB3	A	276	305	Right-handed alpha
Helix 13	AB4	A	320	326	Right-handed alpha
Helix 14	AB5	A	327	330	Right-handed 310
Helix 15	AB6	A	362	370	Right-handed alpha
Helix 16	AB7	A	371	385	Right-handed alpha
Helix 17	AB8	A	392	396	Right-handed 310
Helix 18	AB9	A	419	431	Right-handed alpha
Helix 19	AC1	A	444	455	Right-handed alpha
Helix 20	AC2	A	463	465	Right-handed 310
Helix 21	AC3	A	475	479	Right-handed 310
Helix 22	AC4	A	494	501	Right-handed alpha
Helix 23	AC5	A	503	514	Right-handed alpha
Helix 24	AC6	A	515	520	Right-handed 310
Helix 25	AC7	A	521	532	Right-handed alpha
Helix 26	AC8	A	542	547	Right-handed alpha
Helix 27	AC9	A	549	553	Right-handed 310
Helix 28	AD1	A	574	576	Right-handed 310
Helix 29	AD2	A	577	591	Right-handed alpha
Helix 30	AD3	D	103	107	Right-handed 310
Helix 31	AD4	D	117	131	Right-handed alpha
Helix 32	AD5	D	163	167	Right-handed 310
Helix 33	AD6	D	168	175	Right-handed alpha
Helix 34	AD7	D	195	214	Right-handed alpha
Helix 35	AD8	D	217	227	Right-handed alpha
Helix 36	AD9	D	235	250	Right-handed alpha
Helix 37	AE1	D	253	257	Right-handed 310
Helix 38	AE2	D	258	263	Right-handed alpha
Helix 39	AE3	D	265	276	Right-handed alpha
Helix 40	AE4	D	276	304	Right-handed alpha
Helix 41	AE5	D	320	325	Right-handed alpha
Helix 42	AE6	D	326	330	Right-handed 310
Helix 43	AE7	D	362	370	Right-handed alpha
Helix 44	AE8	D	371	385	Right-handed alpha
Helix 45	AE9	D	392	397	Right-handed 310
Helix 46	AF1	D	419	430	Right-handed alpha
Helix 47	AF2	D	444	455	Right-handed alpha
Helix 48	AF3	D	463	465	Right-handed 310
Helix 49	AF4	D	475	479	Right-handed 310
Helix 50	AF5	D	494	501	Right-handed alpha
Helix 51	AF6	D	503	514	Right-handed alpha
Helix 52	AF7	D	515	518	Right-handed 310
Helix 53	AF8	D	521	532	Right-handed alpha
Helix 54	AF9	D	542	547	Right-handed alpha
Helix 55	AG1	D	549	553	Right-handed 310
Helix 56	AG2	D	577	591	Right-handed alpha
Helix 57	AG3	B	78	92	Right-handed alpha
Helix 58	AG4	B	101	132	Right-handed alpha
Helix 59	AG5	B	148	156	Right-handed alpha
Helix 60	AG6	B	158	169	Right-handed alpha
Helix 61	AG7	B	172	179	Right-handed alpha
Helix 62	AG8	B	188	204	Right-handed alpha
Helix 63	AG9	B	304	308	Right-handed 310
Helix 64	AH1	B	309	315	Right-handed alpha
Helix 65	AH2	B	317	322	Right-handed alpha
Helix 66	AH3	B	322	330	Right-handed alpha
Helix 67	AH4	B	331	333	Right-handed 310
Helix 68	AH5	B	341	372	Right-handed alpha
Helix 69	AH6	B	376	382	Right-handed 310
Helix 70	AH7	B	395	407	Right-handed alpha
Helix 71	AH8	B	411	422	Right-handed alpha
Helix 72	AH9	B	431	435	Right-handed 310
Helix 73	AI1	B	440	447	Right-handed alpha
Helix 74	AI2	B	447	470	Right-handed alpha
Helix 75	AI3	B	473	485	Right-handed alpha
Helix 76	AI4	B	493	498	Right-handed alpha
Helix 77	AI5	B	502	506	Right-handed 310
Helix 78	AI6	B	580	588	Right-handed alpha
Helix 79	AI7	B	595	605	Right-handed alpha
Helix 80	AI8	B	607	614	Right-handed alpha
Helix 81	AI9	B	626	631	Right-handed alpha
Helix 82	AJ1	B	635	647	Right-handed alpha
Helix 83	AJ2	B	649	653	Right-handed 310
Helix 84	AJ3	B	654	665	Right-handed 310
Helix 85	AJ4	B	667	694	Right-handed alpha
Helix 86	AJ5	B	715	732	Right-handed alpha
Helix 87	AJ6	B	734	742	Right-handed alpha
Helix 88	AJ7	B	757	777	Right-handed alpha
Helix 89	AJ8	B	780	782	Right-handed 310
Helix 90	AJ9	B	793	801	Right-handed alpha
Helix 91	AK1	B	802	804	Right-handed 310
Helix 92	AK2	B	820	828	Right-handed alpha
Helix 93	AK3	B	839	848	Right-handed alpha
Helix 94	AK4	B	849	852	Right-handed 310
Helix 95	AK5	B	858	860	Right-handed 310
Helix 96	AK6	B	861	871	Right-handed alpha
Helix 97	AK7	B	877	889	Right-handed alpha
Helix 98	AK8	B	897	903	Right-handed alpha
Helix 99	AK9	B	917	937	Right-handed alpha
Helix 100	AL1	B	938	952	Right-handed alpha
Helix 101	AL2	B	953	956	Right-handed 310
Helix 102	AL3	B	957	969	Right-handed alpha
Helix 103	AL4	C	81	91	Right-handed alpha
Helix 104	AL5	C	101	132	Right-handed alpha
Helix 105	AL6	C	148	156	Right-handed alpha
Helix 106	AL7	C	158	169	Right-handed alpha
Helix 107	AL8	C	172	178	Right-handed alpha
Helix 108	AL9	C	188	204	Right-handed alpha
Helix 109	AM1	C	304	308	Right-handed 310
Helix 110	AM2	C	309	315	Right-handed alpha
Helix 111	AM3	C	317	322	Right-handed alpha
Helix 112	AM4	C	322	330	Right-handed alpha
Helix 113	AM5	C	331	333	Right-handed 310
Helix 114	AM6	C	341	372	Right-handed alpha
Helix 115	AM7	C	376	382	Right-handed 310
Helix 116	AM8	C	395	407	Right-handed alpha
Helix 117	AM9	C	411	421	Right-handed alpha
Helix 118	AN1	C	431	435	Right-handed 310
Helix 119	AN2	C	440	447	Right-handed alpha
Helix 120	AN3	C	447	470	Right-handed alpha
Helix 121	AN4	C	473	485	Right-handed alpha
Helix 122	AN5	C	580	588	Right-handed alpha
Helix 123	AN6	C	595	606	Right-handed alpha
Helix 124	AN7	C	607	614	Right-handed alpha
Helix 125	AN8	C	626	631	Right-handed alpha
Helix 126	AN9	C	635	647	Right-handed alpha
Helix 127	AO1	C	648	653	Right-handed 310
Helix 128	AO2	C	654	665	Right-handed 310
Helix 129	AO3	C	667	694	Right-handed alpha
Helix 130	AO4	C	715	732	Right-handed alpha
Helix 131	AO5	C	734	742	Right-handed alpha
Helix 132	AO6	C	757	776	Right-handed alpha
Helix 133	AO7	C	793	801	Right-handed alpha
Helix 134	AO8	C	802	804	Right-handed 310
Helix 135	AO9	C	820	828	Right-handed alpha
Helix 136	AP1	C	839	848	Right-handed alpha
Helix 137	AP2	C	858	871	Right-handed alpha
Helix 138	AP3	C	877	888	Right-handed alpha
Helix 139	AP4	C	897	903	Right-handed alpha
Helix 140	AP5	C	917	937	Right-handed alpha
Helix 141	AP6	C	938	952	Right-handed alpha
Helix 142	AP7	C	957	969	Right-handed alpha

There are 14 sheets in PDB entry 9LPZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	437	first strand
Strand 2	A	387	391	parallel
Strand 3	A	307	313	parallel
Strand 4	A	134	136	parallel
Strand 5	A	97	101	parallel
Strand 6	A	537	541	parallel
Strand 7	A	483	486	parallel
Strand 8	A	458	461	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	359	first strand
Strand 2	A	340	344	anti-parallel
Strand 3	A	398	403	anti-parallel
Strand 4	A	413	416	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	437	first strand
Strand 2	D	387	391	parallel
Strand 3	D	307	313	parallel
Strand 4	D	134	136	parallel
Strand 5	D	97	101	parallel
Strand 6	D	537	541	parallel
Strand 7	D	483	486	parallel
Strand 8	D	458	461	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	359	first strand
Strand 2	D	340	344	anti-parallel
Strand 3	D	400	403	anti-parallel
Strand 4	D	413	414	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	256	first strand
Strand 2	B	274	286	anti-parallel
Strand 3	B	293	302	anti-parallel
Strand 4	B	208	213	parallel
Strand 5	B	135	139	parallel
Strand 6	B	384	388	parallel
Strand 7	B	423	426	parallel
Strand 8	B	591	593	parallel
Strand 9	B	618	620	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	225	first strand
Strand 2	B	228	232	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	268	271	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	439	first strand
Strand 2	B	577	579	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	788	first strand
Strand 2	B	745	750	parallel
Strand 3	B	702	707	parallel
Strand 4	B	806	809	parallel
Strand 5	B	831	834	parallel
Strand 6	B	853	854	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	256	first strand
Strand 2	C	274	286	anti-parallel
Strand 3	C	293	302	anti-parallel
Strand 4	C	208	213	parallel
Strand 5	C	135	139	parallel
Strand 6	C	384	389	parallel
Strand 7	C	423	426	parallel
Strand 8	C	591	593	parallel
Strand 9	C	618	620	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	225	first strand
Strand 2	C	228	232	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	262	first strand
Strand 2	C	268	271	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	439	first strand
Strand 2	C	577	579	anti-parallel
Strand 3	C	487	488	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	784	788	first strand
Strand 2	C	745	750	parallel
Strand 3	C	702	707	parallel
Strand 4	C	806	809	parallel
Strand 5	C	831	834	parallel
Strand 6	C	853	854	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LPZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LPZ