Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQ0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LQ0 entry

There is 1 chain in PDB entry 9LQ0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9LQ0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 24Right-handed alpha
Helix 2
AA2
A
102 111Right-handed alpha
Helix 3
AA3
A
115 118Right-handed 310
Helix 4
AA4
A
119 130Right-handed alpha
Helix 5
AA5
A
159 170Right-handed alpha
Helix 6
AA6
A
206 211Right-handed alpha
Helix 7
AA7
A
260 272Right-handed alpha
Helix 8
AA8
A
276 283Right-handed alpha
Helix 9
AA9
A
419 438Right-handed alpha
Helix 10
AB1
A
439 443Right-handed 310
Helix 11
AB2
A
458 470Right-handed alpha
Helix 12
AB3
A
506 510Right-handed 310
Helix 13
AB4
A
518 534Right-handed alpha
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There are 8 sheets in PDB entry 9LQ0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
31 35parallel
Strand 3
A
3 11parallel
Strand 4
A
248 258parallel
Strand 5
A
233 241anti-parallel
Strand 6
A
222 230anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
31 35parallel
Strand 3
A
3 11parallel
Strand 4
A
248 258parallel
Strand 5
A
502 504parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
80 81anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
147 150parallel
Strand 3
A
191 192anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
347 351anti-parallel
Strand 3
A
362 367anti-parallel
Strand 4
A
384 390anti-parallel
Strand 5
A
302 309anti-parallel
Strand 6
A
448 451anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 188first strand
Strand 2
A
347 351anti-parallel
Strand 3
A
362 367anti-parallel
Strand 4
A
384 390anti-parallel
Strand 5
A
302 309anti-parallel
Strand 6
A
471 472anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
289 290parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 400first strand
Strand 2
A
411 413anti-parallel
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