Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQ4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LQ4 entry

There are 3 chains in PDB entry 9LQ4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 143PHE 1035
F
 GLU 9ASP 114
G
 GLU 9ASP 113
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 9LQ4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 156Right-handed alpha
Helix 2
AA2
A
183 197Right-handed alpha
Helix 3
AA3
A
212 216Right-handed alpha
Helix 4
AA4
A
223 229Right-handed alpha
Helix 5
AA5
A
231 236Right-handed 310
Helix 6
AA6
A
237 243Right-handed alpha
Helix 7
AA7
A
244 246Right-handed 310
Helix 8
AA8
A
278 288Right-handed alpha
Helix 9
AA9
A
302 304Right-handed 310
Helix 10
AB1
A
305 313Right-handed alpha
Helix 11
AB2
A
325 338Right-handed alpha
Helix 12
AB3
A
339 352Right-handed alpha
Helix 13
AB4
A
353 359Right-handed alpha
Helix 14
AB5
A
362 379Right-handed alpha
Helix 15
AB6
A
385 388Right-handed 310
Helix 16
AB7
A
389 400Right-handed alpha
Helix 17
AB8
A
408 426Right-handed alpha
Helix 18
AB9
A
432 438Right-handed alpha
Helix 19
AC1
A
443 451Right-handed alpha
Helix 20
AC2
A
468 482Right-handed alpha
Helix 21
AC3
A
487 491Right-handed 310
Helix 22
AC4
A
499 504Right-handed alpha
Helix 23
AC5
A
505 512Right-handed alpha
Helix 24
AC6
A
515 525Right-handed alpha
Helix 25
AC7
A
527 539Right-handed alpha
Helix 26
AC8
A
545 553Right-handed alpha
Helix 27
AC9
A
554 557Right-handed 310
Helix 28
AD1
A
564 579Right-handed alpha
Helix 29
AD2
A
580 589Right-handed alpha
Helix 30
AD3
A
600 612Right-handed alpha
Helix 31
AD4
A
654 668Right-handed alpha
Helix 32
AD5
A
668 674Right-handed alpha
Helix 33
AD6
A
688 700Right-handed alpha
Helix 34
AD7
A
717 727Right-handed alpha
Helix 35
AD8
A
745 758Right-handed alpha
Helix 36
AD9
A
774 786Right-handed alpha
Helix 37
AE1
A
803 814Right-handed alpha
Helix 38
AE2
A
834 845Right-handed alpha
Helix 39
AE3
A
859 871Right-handed alpha
Helix 40
AE4
A
888 900Right-handed alpha
Helix 41
AE5
A
918 928Right-handed alpha
Helix 42
AE6
A
944 946Right-handed 310
Helix 43
AE7
A
947 958Right-handed alpha
Helix 44
AE8
A
973 984Right-handed alpha
Helix 45
AE9
A
1001 1015Right-handed alpha
Helix 46
AF1
F
63 68Right-handed alpha
Helix 47
AF2
G
63 68Right-handed alpha
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There are 8 sheets in PDB entry 9LQ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 211first strand
Strand 2
A
248 253parallel
Strand 3
A
296 301parallel
Strand 4
A
173 177parallel
Strand 5
A
317 320parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
276 277anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 431first strand
Strand 2
A
463 466anti-parallel
Strand 3
A
454 456anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
620 622first strand
Strand 2
A
680 686parallel
Strand 3
A
711 715parallel
Strand 4
A
738 739parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
742 743first strand
Strand 2
A
771 772parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
909 911first strand
Strand 2
A
935 939parallel
Strand 3
A
963 967parallel
Strand 4
A
992 994parallel
Strand 5
A
1019 1021parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
19 22first strand
Strand 2
F
25 27anti-parallel
Strand 3
F
33 43anti-parallel
Strand 4
G
33 43anti-parallel
Strand 5
F
46 53first strand
Strand 6
F
103 110anti-parallel
Strand 7
F
91 100anti-parallel
Strand 8
F
83 85anti-parallel
Strand 9
F
78 79anti-parallel
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There are 16 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
19 22first strand
Strand 2
F
25 27anti-parallel
Strand 3
F
33 43anti-parallel
Strand 4
G
46 53first strand
Strand 5
G
103 110anti-parallel
Strand 6
G
91 100anti-parallel
Strand 7
G
83 86anti-parallel
Strand 8
G
75 79anti-parallel
Strand 9
G
17 22anti-parallel
Strand 10
G
25 28anti-parallel
Strand 11
G
33 43anti-parallel
Strand 12
F
46 53first strand
Strand 13
F
103 110anti-parallel
Strand 14
F
91 100anti-parallel
Strand 15
F
83 85anti-parallel
Strand 16
F
78 79anti-parallel
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