Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LQ5 entry

There are 10 chains in PDB entry 9LQ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 468
B	MET 1	GLU 600
C	MET 45	ILE 423
D	MET 1	PHE 279
E	MET 1	PHE 279
F	MET 1	PHE 279
G	MET 1	GLU 136
H	MET 1	GLU 136
I	MET 1	LEU 314
J	A 1	U 41

There are103 helices in PDB entry 9LQ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	44	Right-handed alpha
Helix 2	AA2	A	47	57	Right-handed alpha
Helix 3	AA3	A	58	60	Right-handed 310
Helix 4	AA4	A	114	116	Right-handed 310
Helix 5	AA5	A	143	149	Right-handed alpha
Helix 6	AA6	A	168	186	Right-handed alpha
Helix 7	AA7	A	191	195	Right-handed 310
Helix 8	AA8	A	212	221	Right-handed alpha
Helix 9	AA9	A	234	237	Right-handed 310
Helix 10	AB1	A	238	259	Right-handed alpha
Helix 11	AB2	A	270	279	Right-handed alpha
Helix 12	AB3	A	285	298	Right-handed alpha
Helix 13	AB4	A	330	334	Right-handed 310
Helix 14	AB5	A	387	391	Right-handed 310
Helix 15	AB6	A	428	433	Right-handed alpha
Helix 16	AB7	A	443	451	Right-handed alpha
Helix 17	AB8	B	10	16	Right-handed alpha
Helix 18	AB9	B	20	45	Right-handed alpha
Helix 19	AC1	B	55	60	Right-handed alpha
Helix 20	AC2	B	79	100	Right-handed alpha
Helix 21	AC3	B	110	122	Right-handed alpha
Helix 22	AC4	B	135	151	Right-handed alpha
Helix 23	AC5	B	170	178	Right-handed alpha
Helix 24	AC6	B	197	205	Right-handed alpha
Helix 25	AC7	B	215	221	Right-handed alpha
Helix 26	AC8	B	227	240	Right-handed alpha
Helix 27	AC9	B	247	262	Right-handed alpha
Helix 28	AD1	B	267	270	Right-handed 310
Helix 29	AD2	B	282	293	Right-handed alpha
Helix 30	AD3	B	297	318	Right-handed alpha
Helix 31	AD4	B	343	362	Right-handed alpha
Helix 32	AD5	B	362	369	Right-handed alpha
Helix 33	AD6	B	391	406	Right-handed alpha
Helix 34	AD7	B	409	419	Right-handed alpha
Helix 35	AD8	B	423	428	Right-handed alpha
Helix 36	AD9	B	455	469	Right-handed alpha
Helix 37	AE1	B	479	495	Right-handed alpha
Helix 38	AE2	B	495	505	Right-handed alpha
Helix 39	AE3	B	508	521	Right-handed alpha
Helix 40	AE4	B	531	560	Right-handed alpha
Helix 41	AE5	B	565	573	Right-handed alpha
Helix 42	AE6	B	575	596	Right-handed alpha
Helix 43	AE7	C	84	100	Right-handed alpha
Helix 44	AE8	C	115	124	Right-handed alpha
Helix 45	AE9	C	129	133	Right-handed 310
Helix 46	AF1	C	216	220	Right-handed 310
Helix 47	AF2	C	221	223	Right-handed 310
Helix 48	AF3	C	239	242	Right-handed alpha
Helix 49	AF4	C	317	327	Right-handed alpha
Helix 50	AF5	C	328	330	Right-handed 310
Helix 51	AF6	C	345	352	Right-handed alpha
Helix 52	AF7	C	400	410	Right-handed alpha
Helix 53	AF8	C	411	418	Right-handed alpha
Helix 54	AF9	D	42	54	Right-handed alpha
Helix 55	AG1	D	57	65	Right-handed alpha
Helix 56	AG2	D	104	118	Right-handed alpha
Helix 57	AG3	D	121	141	Right-handed alpha
Helix 58	AG4	D	174	182	Right-handed alpha
Helix 59	AG5	D	189	197	Right-handed alpha
Helix 60	AG6	D	240	253	Right-handed alpha
Helix 61	AG7	E	42	55	Right-handed alpha
Helix 62	AG8	E	57	65	Right-handed alpha
Helix 63	AG9	E	104	118	Right-handed alpha
Helix 64	AH1	E	121	141	Right-handed alpha
Helix 65	AH2	E	150	154	Right-handed 310
Helix 66	AH3	E	174	182	Right-handed alpha
Helix 67	AH4	E	189	197	Right-handed alpha
Helix 68	AH5	E	240	252	Right-handed alpha
Helix 69	AH6	E	263	267	Right-handed 310
Helix 70	AH7	F	18	22	Right-handed 310
Helix 71	AH8	F	42	55	Right-handed alpha
Helix 72	AH9	F	57	65	Right-handed alpha
Helix 73	AI1	F	104	118	Right-handed alpha
Helix 74	AI2	F	121	141	Right-handed alpha
Helix 75	AI3	F	150	154	Right-handed 310
Helix 76	AI4	F	174	182	Right-handed alpha
Helix 77	AI5	F	189	197	Right-handed alpha
Helix 78	AI6	F	240	253	Right-handed alpha
Helix 79	AI7	F	263	267	Right-handed 310
Helix 80	AI8	G	4	18	Right-handed alpha
Helix 81	AI9	G	29	45	Right-handed alpha
Helix 82	AJ1	G	46	56	Right-handed alpha
Helix 83	AJ2	G	65	82	Right-handed alpha
Helix 84	AJ3	G	101	110	Right-handed alpha
Helix 85	AJ4	G	113	131	Right-handed alpha
Helix 86	AJ5	H	4	18	Right-handed alpha
Helix 87	AJ6	H	29	46	Right-handed alpha
Helix 88	AJ7	H	46	56	Right-handed alpha
Helix 89	AJ8	H	66	82	Right-handed alpha
Helix 90	AJ9	H	101	109	Right-handed alpha
Helix 91	AK1	H	111	133	Right-handed alpha
Helix 92	AK2	I	12	19	Right-handed alpha
Helix 93	AK3	I	20	23	Right-handed 310
Helix 94	AK4	I	32	37	Right-handed alpha
Helix 95	AK5	I	38	53	Right-handed alpha
Helix 96	AK6	I	61	72	Right-handed alpha
Helix 97	AK7	I	116	127	Right-handed alpha
Helix 98	AK8	I	128	132	Right-handed 310
Helix 99	AK9	I	141	161	Right-handed alpha
Helix 100	AL1	I	167	179	Right-handed alpha
Helix 101	AL2	I	261	271	Right-handed alpha
Helix 102	AL3	I	283	299	Right-handed alpha
Helix 103	AL4	I	303	307	Right-handed 310

There are 33 sheets in PDB entry 9LQ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	77	first strand
Strand 2	A	160	165	anti-parallel
Strand 3	A	3	10	anti-parallel
Strand 4	A	199	204	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	153	156	anti-parallel
Strand 3	A	84	88	anti-parallel
Strand 4	A	103	106	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	126	129	parallel
Strand 3	A	139	142	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	375	first strand
Strand 2	A	378	383	anti-parallel
Strand 3	A	223	227	anti-parallel
Strand 4	A	463	464	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	262	first strand
Strand 2	A	267	268	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	284	first strand
Strand 2	A	327	328	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	344	first strand
Strand 2	A	350	358	anti-parallel
Strand 3	A	395	403	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	75	first strand
Strand 2	B	2	8	anti-parallel
Strand 3	B	124	130	anti-parallel
Strand 4	C	185	188	anti-parallel
Strand 5	C	191	194	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	C	383	388	anti-parallel
Strand 3	C	360	363	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	326	first strand
Strand 2	B	329	335	anti-parallel
Strand 3	B	272	281	anti-parallel
Strand 4	B	378	387	anti-parallel
Strand 5	B	434	440	parallel
Strand 6	B	446	452	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	338	first strand
Strand 2	B	341	342	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	146	first strand
Strand 2	C	277	286	anti-parallel
Strand 3	C	150	154	anti-parallel
Strand 4	C	161	166	anti-parallel
Strand 5	C	225	229	anti-parallel
Strand 6	C	234	238	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	146	first strand
Strand 2	C	277	286	anti-parallel
Strand 3	C	46	55	anti-parallel
Strand 4	C	304	311	anti-parallel
Strand 5	C	294	297	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	265	273	parallel
Strand 3	C	243	251	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	176	first strand
Strand 2	C	197	200	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	337	first strand
Strand 2	C	392	396	anti-parallel
Strand 3	C	353	357	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	84	92	anti-parallel
Strand 3	D	229	236	anti-parallel
Strand 4	D	98	103	first strand
Strand 5	D	185	188	parallel
Strand 6	D	146	148	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	81	first strand
Strand 2	D	229	236	anti-parallel
Strand 3	D	84	92	anti-parallel
Strand 4	D	3	7	first strand
Strand 5	D	274	275	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	158	first strand
Strand 2	D	163	164	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	211	first strand
Strand 2	D	214	222	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	259	first strand
Strand 2	D	270	271	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	41	first strand
Strand 2	E	84	92	anti-parallel
Strand 3	E	229	235	anti-parallel
Strand 4	E	98	103	first strand
Strand 5	E	185	188	parallel
Strand 6	E	146	148	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	81	first strand
Strand 2	E	229	235	anti-parallel
Strand 3	E	84	92	anti-parallel
Strand 4	E	3	10	first strand
Strand 5	E	270	275	anti-parallel
Strand 6	E	258	259	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	158	first strand
Strand 2	E	163	164	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	211	first strand
Strand 2	E	214	222	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	84	92	anti-parallel
Strand 3	F	229	235	anti-parallel
Strand 4	F	98	103	first strand
Strand 5	F	185	188	parallel
Strand 6	F	146	148	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	81	first strand
Strand 2	F	229	235	anti-parallel
Strand 3	F	84	92	anti-parallel
Strand 4	F	4	10	first strand
Strand 5	F	270	275	anti-parallel
Strand 6	F	258	259	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	211	first strand
Strand 2	F	214	222	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	27	first strand
Strand 2	G	134	135	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	114	115	first strand
Strand 2	I	202	207	anti-parallel
Strand 3	I	241	245	anti-parallel
Strand 4	I	75	79	anti-parallel
Strand 5	I	311	313	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	198	199	first strand
Strand 2	I	247	248	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	213	218	first strand
Strand 2	I	232	237	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	258	260	first strand
Strand 2	I	252	255	anti-parallel
Strand 3	I	279	282	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LQ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQ5