Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LQ8 entry

There are 11 chains in PDB entry 9LQ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 469
C	MET 45	ILE 423
D	MET 1	PHE 279
E	MET 1	PHE 279
F	MET 1	PHE 279
G	MET 1	GLU 136
H	MET 1	GLU 136
I	MET 1	LEU 314
K	C 10	G 43
J	A 1	U 41
B	MET 1	ASP 599

There are100 helices in PDB entry 9LQ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	44	Right-handed alpha
Helix 2	AA2	A	47	58	Right-handed alpha
Helix 3	AA3	A	114	119	Right-handed 310
Helix 4	AA4	A	143	149	Right-handed alpha
Helix 5	AA5	A	168	186	Right-handed alpha
Helix 6	AA6	A	191	195	Right-handed 310
Helix 7	AA7	A	212	221	Right-handed alpha
Helix 8	AA8	A	238	259	Right-handed alpha
Helix 9	AA9	A	270	279	Right-handed alpha
Helix 10	AB1	A	285	295	Right-handed alpha
Helix 11	AB2	A	330	334	Right-handed 310
Helix 12	AB3	A	387	391	Right-handed 310
Helix 13	AB4	A	443	452	Right-handed alpha
Helix 14	AB5	A	455	459	Right-handed 310
Helix 15	AB6	C	84	101	Right-handed alpha
Helix 16	AB7	C	114	123	Right-handed alpha
Helix 17	AB8	C	129	133	Right-handed 310
Helix 18	AB9	C	216	220	Right-handed 310
Helix 19	AC1	C	221	223	Right-handed 310
Helix 20	AC2	C	239	242	Right-handed alpha
Helix 21	AC3	C	317	327	Right-handed alpha
Helix 22	AC4	C	328	330	Right-handed 310
Helix 23	AC5	C	345	352	Right-handed alpha
Helix 24	AC6	C	400	410	Right-handed alpha
Helix 25	AC7	C	411	418	Right-handed alpha
Helix 26	AC8	D	42	54	Right-handed alpha
Helix 27	AC9	D	57	65	Right-handed alpha
Helix 28	AD1	D	104	118	Right-handed alpha
Helix 29	AD2	D	121	141	Right-handed alpha
Helix 30	AD3	D	174	182	Right-handed alpha
Helix 31	AD4	D	189	197	Right-handed alpha
Helix 32	AD5	D	240	253	Right-handed alpha
Helix 33	AD6	E	42	54	Right-handed alpha
Helix 34	AD7	E	57	65	Right-handed alpha
Helix 35	AD8	E	104	118	Right-handed alpha
Helix 36	AD9	E	121	141	Right-handed alpha
Helix 37	AE1	E	150	154	Right-handed 310
Helix 38	AE2	E	174	182	Right-handed alpha
Helix 39	AE3	E	189	197	Right-handed alpha
Helix 40	AE4	E	240	253	Right-handed alpha
Helix 41	AE5	E	263	267	Right-handed 310
Helix 42	AE6	F	42	54	Right-handed alpha
Helix 43	AE7	F	57	65	Right-handed alpha
Helix 44	AE8	F	104	118	Right-handed alpha
Helix 45	AE9	F	121	141	Right-handed alpha
Helix 46	AF1	F	174	182	Right-handed alpha
Helix 47	AF2	F	189	197	Right-handed alpha
Helix 48	AF3	F	240	252	Right-handed alpha
Helix 49	AF4	F	263	267	Right-handed 310
Helix 50	AF5	G	4	18	Right-handed alpha
Helix 51	AF6	G	29	46	Right-handed alpha
Helix 52	AF7	G	46	56	Right-handed alpha
Helix 53	AF8	G	66	81	Right-handed alpha
Helix 54	AF9	G	101	109	Right-handed alpha
Helix 55	AG1	G	111	130	Right-handed alpha
Helix 56	AG2	G	131	133	Right-handed 310
Helix 57	AG3	H	4	18	Right-handed alpha
Helix 58	AG4	H	29	45	Right-handed alpha
Helix 59	AG5	H	46	56	Right-handed alpha
Helix 60	AG6	H	66	82	Right-handed alpha
Helix 61	AG7	H	84	91	Right-handed alpha
Helix 62	AG8	H	101	109	Right-handed alpha
Helix 63	AG9	H	112	132	Right-handed alpha
Helix 64	AH1	I	12	19	Right-handed alpha
Helix 65	AH2	I	32	38	Right-handed alpha
Helix 66	AH3	I	38	53	Right-handed alpha
Helix 67	AH4	I	61	72	Right-handed alpha
Helix 68	AH5	I	116	127	Right-handed alpha
Helix 69	AH6	I	128	132	Right-handed 310
Helix 70	AH7	I	141	161	Right-handed alpha
Helix 71	AH8	I	167	179	Right-handed alpha
Helix 72	AH9	I	261	271	Right-handed alpha
Helix 73	AI1	I	283	299	Right-handed alpha
Helix 74	AI2	B	10	17	Right-handed alpha
Helix 75	AI3	B	20	45	Right-handed alpha
Helix 76	AI4	B	80	100	Right-handed alpha
Helix 77	AI5	B	111	122	Right-handed alpha
Helix 78	AI6	B	135	151	Right-handed alpha
Helix 79	AI7	B	171	178	Right-handed alpha
Helix 80	AI8	B	197	204	Right-handed alpha
Helix 81	AI9	B	217	221	Right-handed 310
Helix 82	AJ1	B	227	237	Right-handed alpha
Helix 83	AJ2	B	247	261	Right-handed alpha
Helix 84	AJ3	B	262	266	Right-handed 310
Helix 85	AJ4	B	267	270	Right-handed 310
Helix 86	AJ5	B	282	293	Right-handed alpha
Helix 87	AJ6	B	297	319	Right-handed alpha
Helix 88	AJ7	B	343	362	Right-handed alpha
Helix 89	AJ8	B	362	369	Right-handed alpha
Helix 90	AJ9	B	391	406	Right-handed alpha
Helix 91	AK1	B	409	419	Right-handed alpha
Helix 92	AK2	B	422	428	Right-handed alpha
Helix 93	AK3	B	455	469	Right-handed alpha
Helix 94	AK4	B	486	495	Right-handed alpha
Helix 95	AK5	B	495	505	Right-handed alpha
Helix 96	AK6	B	508	520	Right-handed alpha
Helix 97	AK7	B	523	528	Right-handed 310
Helix 98	AK8	B	529	561	Right-handed alpha
Helix 99	AK9	B	565	573	Right-handed alpha
Helix 100	AL1	B	575	596	Right-handed alpha

There are 31 sheets in PDB entry 9LQ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	77	first strand
Strand 2	A	160	165	anti-parallel
Strand 3	A	3	10	anti-parallel
Strand 4	A	199	203	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	153	157	anti-parallel
Strand 3	A	83	88	anti-parallel
Strand 4	A	103	106	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	129	first strand
Strand 2	A	139	142	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	375	first strand
Strand 2	A	378	383	anti-parallel
Strand 3	A	223	227	anti-parallel
Strand 4	A	465	468	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	284	first strand
Strand 2	A	327	328	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	343	first strand
Strand 2	A	350	357	anti-parallel
Strand 3	A	396	403	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	146	first strand
Strand 2	C	278	285	anti-parallel
Strand 3	C	150	153	anti-parallel
Strand 4	C	162	166	anti-parallel
Strand 5	C	225	228	anti-parallel
Strand 6	C	235	238	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	146	first strand
Strand 2	C	278	285	anti-parallel
Strand 3	C	47	55	anti-parallel
Strand 4	C	304	311	anti-parallel
Strand 5	C	295	297	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	265	273	parallel
Strand 3	C	243	251	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	175	first strand
Strand 2	C	198	200	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	193	first strand
Strand 2	C	186	188	anti-parallel
Strand 3	B	124	129	anti-parallel
Strand 4	B	3	8	anti-parallel
Strand 5	B	72	73	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	355	357	first strand
Strand 2	C	393	395	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	363	first strand
Strand 2	C	384	388	anti-parallel
Strand 3	B	159	160	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	84	92	anti-parallel
Strand 3	D	229	236	anti-parallel
Strand 4	D	98	103	first strand
Strand 5	D	185	188	parallel
Strand 6	D	146	148	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	81	first strand
Strand 2	D	229	236	anti-parallel
Strand 3	D	84	92	anti-parallel
Strand 4	D	3	7	first strand
Strand 5	D	274	275	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	156	158	first strand
Strand 2	D	163	165	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	211	first strand
Strand 2	D	214	222	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	259	first strand
Strand 2	D	270	271	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	41	first strand
Strand 2	E	84	92	anti-parallel
Strand 3	E	229	236	anti-parallel
Strand 4	E	98	103	first strand
Strand 5	E	185	188	parallel
Strand 6	E	146	148	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	81	first strand
Strand 2	E	229	236	anti-parallel
Strand 3	E	84	92	anti-parallel
Strand 4	E	3	10	first strand
Strand 5	E	270	275	anti-parallel
Strand 6	E	258	259	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	158	first strand
Strand 2	E	163	164	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	211	first strand
Strand 2	E	214	222	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	84	92	anti-parallel
Strand 3	F	229	235	anti-parallel
Strand 4	F	98	103	first strand
Strand 5	F	185	188	parallel
Strand 6	F	146	148	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	81	first strand
Strand 2	F	229	235	anti-parallel
Strand 3	F	84	92	anti-parallel
Strand 4	F	3	10	first strand
Strand 5	F	270	275	anti-parallel
Strand 6	F	258	259	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	211	first strand
Strand 2	F	214	222	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	114	115	first strand
Strand 2	I	202	207	anti-parallel
Strand 3	I	241	245	anti-parallel
Strand 4	I	75	79	anti-parallel
Strand 5	I	311	313	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	198	199	first strand
Strand 2	I	247	248	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	213	218	first strand
Strand 2	I	232	237	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	258	260	first strand
Strand 2	I	252	255	anti-parallel
Strand 3	I	279	282	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	329	335	anti-parallel
Strand 3	B	272	281	anti-parallel
Strand 4	B	378	387	anti-parallel
Strand 5	B	434	440	parallel
Strand 6	B	446	452	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	338	first strand
Strand 2	B	341	342	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LQ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQ8