Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LQJ entry

There are 19 chains in PDB entry 9LQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2ASP 770
B
 PRO 16PRO 16
B
 GLY 18PRO 19
B
 GLY 21PRO 22
B
 GLY 24PRO 25
B
 GLY 27PRO 28
B
 GLY 30GLY 30
C
 PRO 16PRO 16
C
 GLY 18PRO 19
C
 GLY 21PRO 22
C
 GLY 24PRO 25
C
 GLY 27PRO 28
C
 GLY 30GLY 30
D
 PRO 16PRO 16
D
 GLY 18PRO 19
D
 GLY 21PRO 22
D
 GLY 24PRO 25
D
 GLY 27PRO 28
D
 GLY 30GLY 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 37 helices in PDB entry 9LQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 16Right-handed alpha
Helix 2
AA2
A
17 26Right-handed alpha
Helix 3
AA3
A
29 33Right-handed 310
Helix 4
AA4
A
40 48Right-handed alpha
Helix 5
AA5
A
49 64Right-handed alpha
Helix 6
AA6
A
74 92Right-handed alpha
Helix 7
AA7
A
100 105Right-handed alpha
Helix 8
AA8
A
107 117Right-handed alpha
Helix 9
AA9
A
124 138Right-handed alpha
Helix 10
AB1
A
144 161Right-handed alpha
Helix 11
AB2
A
161 168Right-handed alpha
Helix 12
AB3
A
168 194Right-handed alpha
Helix 13
AB4
A
196 200Right-handed 310
Helix 14
AB5
A
207 218Right-handed alpha
Helix 15
AB6
A
226 241Right-handed alpha
Helix 16
AB7
A
242 244Right-handed 310
Helix 17
AB8
A
248 261Right-handed alpha
Helix 18
AB9
A
265 280Right-handed alpha
Helix 19
AC1
A
290 303Right-handed alpha
Helix 20
AC2
A
323 346Right-handed alpha
Helix 21
AC3
A
355 359Right-handed 310
Helix 22
AC4
A
367 372Right-handed alpha
Helix 23
AC5
A
373 378Right-handed alpha
Helix 24
AC6
A
408 426Right-handed alpha
Helix 25
AC7
A
434 441Right-handed 310
Helix 26
AC8
A
442 454Right-handed alpha
Helix 27
AC9
A
465 470Right-handed alpha
Helix 28
AD1
A
482 488Right-handed alpha
Helix 29
AD2
A
496 511Right-handed alpha
Helix 30
AD3
A
512 525Right-handed alpha
Helix 31
AD4
A
527 541Right-handed alpha
Helix 32
AD5
A
541 558Right-handed alpha
Helix 33
AD6
A
559 562Right-handed 310
Helix 34
AD7
A
568 573Right-handed 310
Helix 35
AD8
A
579 592Right-handed alpha
Helix 36
AD9
A
622 643Right-handed alpha
Helix 37
AE1
A
646 652Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 9LQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 309first strand
Strand 2
A
314 318anti-parallel
Strand 3
A
360 365parallel
Strand 4
A
394 398parallel
Strand 5
A
386 389anti-parallel
Strand 6
D
26 27anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
593 602first strand
Strand 2
A
607 619anti-parallel
Strand 3
A
666 676anti-parallel
Strand 4
A
653 661anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 699first strand
Strand 2
A
759 769parallel
Strand 3
A
744 754anti-parallel
Strand 4
A
718 725anti-parallel
Strand 5
A
729 731anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
704 705first strand
Strand 2
A
737 738anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il