Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LQL entry

There are 4 chains in PDB entry 9LQL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 5	GLY 753
B	ARG 5	GLY 753
C	ARG 20	GLY 829
D	ARG 5	GLY 753

There are116 helices in PDB entry 9LQL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	13	Right-handed alpha
Helix 2	AA2	A	15	23	Right-handed alpha
Helix 3	AA3	A	34	38	Right-handed 310
Helix 4	AA4	A	74	79	Right-handed alpha
Helix 5	AA5	A	80	82	Right-handed 310
Helix 6	AA6	A	83	101	Right-handed alpha
Helix 7	AA7	A	119	124	Right-handed 310
Helix 8	AA8	A	129	146	Right-handed alpha
Helix 9	AA9	A	173	180	Right-handed alpha
Helix 10	AB1	A	180	192	Right-handed alpha
Helix 11	AB2	A	212	217	Right-handed alpha
Helix 12	AB3	A	239	247	Right-handed alpha
Helix 13	AB4	A	255	268	Right-handed alpha
Helix 14	AB5	A	272	293	Right-handed alpha
Helix 15	AB6	A	301	316	Right-handed alpha
Helix 16	AB7	A	340	343	Right-handed 310
Helix 17	AB8	A	362	372	Right-handed alpha
Helix 18	AB9	A	391	405	Right-handed alpha
Helix 19	AC1	A	431	445	Right-handed alpha
Helix 20	AC2	A	462	466	Right-handed 310
Helix 21	AC3	A	478	489	Right-handed alpha
Helix 22	AC4	A	504	514	Right-handed 310
Helix 23	AC5	A	530	538	Right-handed alpha
Helix 24	AC6	A	629	634	Right-handed alpha
Helix 25	AC7	A	685	690	Right-handed 310
Helix 26	AC8	A	691	705	Right-handed alpha
Helix 27	AC9	A	716	726	Right-handed alpha
Helix 28	AD1	A	728	734	Right-handed 310
Helix 29	AD2	A	740	753	Right-handed alpha
Helix 30	AD3	B	6	13	Right-handed alpha
Helix 31	AD4	B	15	23	Right-handed alpha
Helix 32	AD5	B	34	38	Right-handed 310
Helix 33	AD6	B	74	79	Right-handed alpha
Helix 34	AD7	B	80	82	Right-handed 310
Helix 35	AD8	B	83	101	Right-handed alpha
Helix 36	AD9	B	119	124	Right-handed 310
Helix 37	AE1	B	129	146	Right-handed alpha
Helix 38	AE2	B	173	180	Right-handed alpha
Helix 39	AE3	B	180	192	Right-handed alpha
Helix 40	AE4	B	212	217	Right-handed alpha
Helix 41	AE5	B	239	247	Right-handed alpha
Helix 42	AE6	B	255	268	Right-handed alpha
Helix 43	AE7	B	272	293	Right-handed alpha
Helix 44	AE8	B	301	316	Right-handed alpha
Helix 45	AE9	B	340	343	Right-handed 310
Helix 46	AF1	B	362	372	Right-handed alpha
Helix 47	AF2	B	391	405	Right-handed alpha
Helix 48	AF3	B	431	445	Right-handed alpha
Helix 49	AF4	B	462	466	Right-handed 310
Helix 50	AF5	B	478	489	Right-handed alpha
Helix 51	AF6	B	504	514	Right-handed 310
Helix 52	AF7	B	530	538	Right-handed alpha
Helix 53	AF8	B	629	634	Right-handed alpha
Helix 54	AF9	B	685	690	Right-handed 310
Helix 55	AG1	B	691	705	Right-handed alpha
Helix 56	AG2	B	715	726	Right-handed alpha
Helix 57	AG3	B	727	732	Right-handed alpha
Helix 58	AG4	B	740	753	Right-handed alpha
Helix 59	AG5	C	22	29	Right-handed alpha
Helix 60	AG6	C	31	39	Right-handed alpha
Helix 61	AG7	C	50	54	Right-handed 310
Helix 62	AG8	C	125	130	Right-handed alpha
Helix 63	AG9	C	131	133	Right-handed 310
Helix 64	AH1	C	134	152	Right-handed alpha
Helix 65	AH2	C	170	175	Right-handed 310
Helix 66	AH3	C	180	198	Right-handed alpha
Helix 67	AH4	C	224	231	Right-handed alpha
Helix 68	AH5	C	231	243	Right-handed alpha
Helix 69	AH6	C	263	268	Right-handed alpha
Helix 70	AH7	C	290	298	Right-handed alpha
Helix 71	AH8	C	306	319	Right-handed alpha
Helix 72	AH9	C	323	344	Right-handed alpha
Helix 73	AI1	C	352	367	Right-handed alpha
Helix 74	AI2	C	391	394	Right-handed 310
Helix 75	AI3	C	413	423	Right-handed alpha
Helix 76	AI4	C	442	456	Right-handed alpha
Helix 77	AI5	C	482	496	Right-handed alpha
Helix 78	AI6	C	513	517	Right-handed 310
Helix 79	AI7	C	529	540	Right-handed alpha
Helix 80	AI8	C	555	565	Right-handed 310
Helix 81	AI9	C	581	589	Right-handed alpha
Helix 82	AJ1	C	680	685	Right-handed alpha
Helix 83	AJ2	C	736	741	Right-handed 310
Helix 84	AJ3	C	742	781	Right-handed alpha
Helix 85	AJ4	C	791	801	Right-handed alpha
Helix 86	AJ5	C	804	810	Right-handed 310
Helix 87	AJ6	C	816	829	Right-handed alpha
Helix 88	AJ7	D	6	13	Right-handed alpha
Helix 89	AJ8	D	15	23	Right-handed alpha
Helix 90	AJ9	D	34	38	Right-handed 310
Helix 91	AK1	D	74	79	Right-handed alpha
Helix 92	AK2	D	80	82	Right-handed 310
Helix 93	AK3	D	83	101	Right-handed alpha
Helix 94	AK4	D	119	124	Right-handed 310
Helix 95	AK5	D	129	147	Right-handed alpha
Helix 96	AK6	D	173	180	Right-handed alpha
Helix 97	AK7	D	180	192	Right-handed alpha
Helix 98	AK8	D	212	217	Right-handed alpha
Helix 99	AK9	D	239	247	Right-handed alpha
Helix 100	AL1	D	255	268	Right-handed alpha
Helix 101	AL2	D	272	293	Right-handed alpha
Helix 102	AL3	D	301	316	Right-handed alpha
Helix 103	AL4	D	340	343	Right-handed 310
Helix 104	AL5	D	362	372	Right-handed alpha
Helix 105	AL6	D	391	405	Right-handed alpha
Helix 106	AL7	D	431	445	Right-handed alpha
Helix 107	AL8	D	462	466	Right-handed 310
Helix 108	AL9	D	478	489	Right-handed alpha
Helix 109	AM1	D	504	514	Right-handed 310
Helix 110	AM2	D	530	538	Right-handed alpha
Helix 111	AM3	D	629	634	Right-handed alpha
Helix 112	AM4	D	685	690	Right-handed 310
Helix 113	AM5	D	691	705	Right-handed alpha
Helix 114	AM6	D	716	726	Right-handed alpha
Helix 115	AM7	D	727	732	Right-handed alpha
Helix 116	AM8	D	740	753	Right-handed alpha

There are 25 sheets in PDB entry 9LQL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	105	107	parallel
Strand 3	A	150	153	parallel
Strand 4	A	196	198	parallel
Strand 5	A	229	231	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	208	first strand
Strand 2	A	203	204	anti-parallel
Strand 3	A	169	171	parallel
Strand 4	A	521	522	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	322	first strand
Strand 2	A	468	471	anti-parallel
Strand 3	A	448	453	parallel
Strand 4	A	407	413	parallel
Strand 5	A	334	338	parallel
Strand 6	A	376	380	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	554	561	first strand
Strand 2	A	572	580	anti-parallel
Strand 3	A	621	628	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	567	first strand
Strand 2	A	661	670	parallel
Strand 3	A	648	655	anti-parallel
Strand 4	A	586	596	anti-parallel
Strand 5	A	607	616	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	635	637	first strand
Strand 2	A	642	644	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	46	first strand
Strand 2	B	105	107	parallel
Strand 3	B	150	153	parallel
Strand 4	B	196	198	parallel
Strand 5	B	229	231	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	208	first strand
Strand 2	B	203	204	anti-parallel
Strand 3	B	169	171	parallel
Strand 4	B	521	522	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	322	first strand
Strand 2	B	468	471	anti-parallel
Strand 3	B	448	453	parallel
Strand 4	B	407	413	parallel
Strand 5	B	334	338	parallel
Strand 6	B	376	380	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	554	561	first strand
Strand 2	B	572	580	anti-parallel
Strand 3	B	621	628	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	567	first strand
Strand 2	B	661	670	parallel
Strand 3	B	648	655	anti-parallel
Strand 4	B	586	596	anti-parallel
Strand 5	B	607	616	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	637	first strand
Strand 2	B	642	644	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	156	158	parallel
Strand 3	C	201	204	parallel
Strand 4	C	247	249	parallel
Strand 5	C	280	282	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	77	first strand
Strand 2	C	117	118	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	259	first strand
Strand 2	C	254	255	anti-parallel
Strand 3	C	220	222	parallel
Strand 4	C	572	573	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	369	373	first strand
Strand 2	C	519	522	anti-parallel
Strand 3	C	499	504	parallel
Strand 4	C	458	464	parallel
Strand 5	C	384	389	parallel
Strand 6	C	426	431	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	605	612	first strand
Strand 2	C	623	631	anti-parallel
Strand 3	C	672	679	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	616	618	first strand
Strand 2	C	712	721	parallel
Strand 3	C	699	706	anti-parallel
Strand 4	C	637	647	anti-parallel
Strand 5	C	658	667	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	686	688	first strand
Strand 2	C	693	695	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	46	first strand
Strand 2	D	105	107	parallel
Strand 3	D	150	153	parallel
Strand 4	D	196	198	parallel
Strand 5	D	229	231	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	208	first strand
Strand 2	D	203	204	anti-parallel
Strand 3	D	169	171	parallel
Strand 4	D	521	522	parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	322	first strand
Strand 2	D	468	471	anti-parallel
Strand 3	D	448	453	parallel
Strand 4	D	407	413	parallel
Strand 5	D	333	338	parallel
Strand 6	D	375	380	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	554	561	first strand
Strand 2	D	572	580	anti-parallel
Strand 3	D	621	628	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	565	567	first strand
Strand 2	D	661	670	parallel
Strand 3	D	648	655	anti-parallel
Strand 4	D	586	596	anti-parallel
Strand 5	D	607	616	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	635	637	first strand
Strand 2	D	642	644	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LQL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQL