Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LQP entry

There are 10 chains in PDB entry 9LQP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 461	MET 1003
B	MET 1	CYS 344
C	GLY 461	ASN 1004
D	MET 1	SER 345
I	C 17	A 43
J	T 17	G 43
x	C 31	G 45
M	C 1	G 15
y	A 23	G 34
L	C 1	T 12

There are 51 helices in PDB entry 9LQP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	466	474	Right-handed alpha
Helix 2	AA2	A	477	493	Right-handed alpha
Helix 3	AA3	A	499	511	Right-handed alpha
Helix 4	AA4	A	558	570	Right-handed alpha
Helix 5	AA5	A	570	581	Right-handed alpha
Helix 6	AA6	A	666	683	Right-handed alpha
Helix 7	AA7	A	711	716	Right-handed alpha
Helix 8	AA8	A	733	741	Right-handed alpha
Helix 9	AA9	A	749	763	Right-handed alpha
Helix 10	AB1	A	764	767	Right-handed 310
Helix 11	AB2	A	769	776	Right-handed alpha
Helix 12	AB3	A	792	813	Right-handed alpha
Helix 13	AB4	A	822	842	Right-handed alpha
Helix 14	AB5	A	850	858	Right-handed alpha
Helix 15	AB6	A	859	868	Right-handed alpha
Helix 16	AB7	A	872	895	Right-handed alpha
Helix 17	AB8	A	897	902	Right-handed alpha
Helix 18	AB9	A	902	924	Right-handed alpha
Helix 19	AC1	A	933	942	Right-handed alpha
Helix 20	AC2	A	942	951	Right-handed alpha
Helix 21	AC3	A	953	957	Right-handed 310
Helix 22	AC4	A	958	975	Right-handed alpha
Helix 23	AC5	A	982	996	Right-handed alpha
Helix 24	AC6	A	996	1003	Right-handed alpha
Helix 25	AC7	B	308	314	Right-handed alpha
Helix 26	AC8	C	463	474	Right-handed alpha
Helix 27	AC9	C	477	493	Right-handed alpha
Helix 28	AD1	C	499	511	Right-handed alpha
Helix 29	AD2	C	558	570	Right-handed alpha
Helix 30	AD3	C	571	581	Right-handed alpha
Helix 31	AD4	C	664	683	Right-handed alpha
Helix 32	AD5	C	708	717	Right-handed alpha
Helix 33	AD6	C	733	741	Right-handed alpha
Helix 34	AD7	C	749	763	Right-handed alpha
Helix 35	AD8	C	768	776	Right-handed alpha
Helix 36	AD9	C	792	813	Right-handed alpha
Helix 37	AE1	C	822	842	Right-handed alpha
Helix 38	AE2	C	850	858	Right-handed alpha
Helix 39	AE3	C	859	867	Right-handed alpha
Helix 40	AE4	C	873	895	Right-handed alpha
Helix 41	AE5	C	897	902	Right-handed alpha
Helix 42	AE6	C	902	908	Right-handed alpha
Helix 43	AE7	C	909	923	Right-handed alpha
Helix 44	AE8	C	933	942	Right-handed alpha
Helix 45	AE9	C	942	951	Right-handed alpha
Helix 46	AF1	C	953	957	Right-handed 310
Helix 47	AF2	C	960	975	Right-handed alpha
Helix 48	AF3	C	982	995	Right-handed alpha
Helix 49	AF4	C	1000	1004	Right-handed 310
Helix 50	AF5	D	168	172	Right-handed 310
Helix 51	AF6	D	308	313	Right-handed alpha

There are 24 sheets in PDB entry 9LQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	687	690	anti-parallel
Strand 3	A	695	698	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	536	first strand
Strand 2	A	555	557	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	654	first strand
Strand 2	A	620	626	anti-parallel
Strand 3	A	595	601	anti-parallel
Strand 4	A	703	706	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	632	first strand
Strand 2	A	637	642	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	27	31	anti-parallel
Strand 3	B	46	51	anti-parallel
Strand 4	B	54	59	anti-parallel
Strand 5	B	2	8	parallel
Strand 6	B	338	343	anti-parallel
Strand 7	B	326	331	anti-parallel
Strand 8	B	318	321	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	121	122	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	107	110	anti-parallel
Strand 4	B	125	127	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	184	185	anti-parallel
Strand 3	B	192	193	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	222	223	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	212	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	246	248	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	212	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	251	252	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	264	first strand
Strand 2	B	272	274	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	290	first strand
Strand 2	B	299	301	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	687	690	anti-parallel
Strand 3	C	695	697	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	554	557	anti-parallel
Strand 3	C	653	658	anti-parallel
Strand 4	C	619	631	anti-parallel
Strand 5	C	638	642	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	554	557	anti-parallel
Strand 3	C	653	658	anti-parallel
Strand 4	C	619	631	anti-parallel
Strand 5	C	593	602	anti-parallel
Strand 6	C	700	704	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	50	first strand
Strand 2	D	54	57	anti-parallel
Strand 3	D	2	8	parallel
Strand 4	D	336	343	anti-parallel
Strand 5	D	326	333	anti-parallel
Strand 6	D	318	321	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	27	31	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	121	122	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	79	first strand
Strand 2	D	91	94	anti-parallel
Strand 3	D	107	109	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	191	196	parallel
Strand 3	D	181	185	anti-parallel
Strand 4	D	152	156	anti-parallel
Strand 5	D	141	145	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	215	219	anti-parallel
Strand 3	D	236	239	anti-parallel
Strand 4	D	246	249	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	272	first strand
Strand 2	D	289	291	anti-parallel
Strand 3	D	298	299	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LQP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQP