Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LQQ entry

There are 10 chains in PDB entry 9LQQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	T 18	C 42
J	G 18	A 42
A	GLY 461	MET 1003
B	MET 1	CYS 344
C	GLY 461	ASN 1004
D	MET 1	SER 345
L	C 1	T 12
y	A 23	G 34
M	C 1	G 15
x	C 31	G 45

There are 50 helices in PDB entry 9LQQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	468	473	Right-handed alpha
Helix 2	AA2	A	477	493	Right-handed alpha
Helix 3	AA3	A	499	511	Right-handed alpha
Helix 4	AA4	A	558	570	Right-handed alpha
Helix 5	AA5	A	570	581	Right-handed alpha
Helix 6	AA6	A	664	683	Right-handed alpha
Helix 7	AA7	A	708	716	Right-handed alpha
Helix 8	AA8	A	733	739	Right-handed alpha
Helix 9	AA9	A	749	762	Right-handed alpha
Helix 10	AB1	A	768	776	Right-handed alpha
Helix 11	AB2	A	792	814	Right-handed alpha
Helix 12	AB3	A	822	842	Right-handed alpha
Helix 13	AB4	A	850	858	Right-handed alpha
Helix 14	AB5	A	859	868	Right-handed alpha
Helix 15	AB6	A	872	895	Right-handed alpha
Helix 16	AB7	A	897	902	Right-handed alpha
Helix 17	AB8	A	902	923	Right-handed alpha
Helix 18	AB9	A	933	942	Right-handed alpha
Helix 19	AC1	A	942	951	Right-handed alpha
Helix 20	AC2	A	953	957	Right-handed 310
Helix 21	AC3	A	958	975	Right-handed alpha
Helix 22	AC4	A	982	996	Right-handed alpha
Helix 23	AC5	A	996	1003	Right-handed alpha
Helix 24	AC6	C	463	474	Right-handed alpha
Helix 25	AC7	C	477	492	Right-handed alpha
Helix 26	AC8	C	499	511	Right-handed alpha
Helix 27	AC9	C	558	570	Right-handed alpha
Helix 28	AD1	C	570	581	Right-handed alpha
Helix 29	AD2	C	666	685	Right-handed alpha
Helix 30	AD3	C	708	716	Right-handed alpha
Helix 31	AD4	C	733	740	Right-handed alpha
Helix 32	AD5	C	749	763	Right-handed alpha
Helix 33	AD6	C	768	777	Right-handed alpha
Helix 34	AD7	C	793	813	Right-handed alpha
Helix 35	AD8	C	822	840	Right-handed alpha
Helix 36	AD9	C	850	858	Right-handed alpha
Helix 37	AE1	C	859	868	Right-handed alpha
Helix 38	AE2	C	873	895	Right-handed alpha
Helix 39	AE3	C	897	902	Right-handed alpha
Helix 40	AE4	C	902	924	Right-handed alpha
Helix 41	AE5	C	933	942	Right-handed alpha
Helix 42	AE6	C	942	950	Right-handed alpha
Helix 43	AE7	C	952	957	Right-handed alpha
Helix 44	AE8	C	960	975	Right-handed alpha
Helix 45	AE9	C	979	996	Right-handed alpha
Helix 46	AF1	C	999	1004	Right-handed alpha
Helix 47	AF2	D	11	15	Right-handed 310
Helix 48	AF3	D	163	167	Right-handed 310
Helix 49	AF4	D	168	172	Right-handed 310
Helix 50	AF5	D	308	313	Right-handed alpha

There are 23 sheets in PDB entry 9LQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	554	556	anti-parallel
Strand 3	A	653	658	anti-parallel
Strand 4	A	618	632	anti-parallel
Strand 5	A	592	603	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	554	556	anti-parallel
Strand 3	A	653	658	anti-parallel
Strand 4	A	618	632	anti-parallel
Strand 5	A	637	642	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	687	691	first strand
Strand 2	A	694	698	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	6	first strand
Strand 2	B	338	343	anti-parallel
Strand 3	B	326	331	anti-parallel
Strand 4	B	318	321	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	24	first strand
Strand 2	B	27	29	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	54	59	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	107	114	anti-parallel
Strand 4	B	121	122	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	107	114	anti-parallel
Strand 4	B	125	127	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	146	first strand
Strand 2	B	151	156	anti-parallel
Strand 3	B	183	186	anti-parallel
Strand 4	B	191	193	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	212	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	233	237	anti-parallel
Strand 4	B	251	252	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	264	first strand
Strand 2	B	272	274	anti-parallel
Strand 3	B	288	291	anti-parallel
Strand 4	B	298	299	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	687	691	anti-parallel
Strand 3	C	694	697	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	536	first strand
Strand 2	C	555	556	anti-parallel
Strand 3	C	652	658	anti-parallel
Strand 4	C	620	631	anti-parallel
Strand 5	C	639	641	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	536	first strand
Strand 2	C	555	556	anti-parallel
Strand 3	C	652	658	anti-parallel
Strand 4	C	620	631	anti-parallel
Strand 5	C	591	601	anti-parallel
Strand 6	C	700	706	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	30	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	54	59	anti-parallel
Strand 4	D	2	8	parallel
Strand 5	D	336	343	anti-parallel
Strand 6	D	326	333	anti-parallel
Strand 7	D	318	321	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	80	first strand
Strand 2	D	90	94	anti-parallel
Strand 3	D	107	110	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	112	116	first strand
Strand 2	D	119	122	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	191	195	parallel
Strand 3	D	182	185	anti-parallel
Strand 4	D	153	155	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	160	161	first strand
Strand 2	D	175	176	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	215	219	anti-parallel
Strand 3	D	232	238	anti-parallel
Strand 4	D	247	249	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	215	219	anti-parallel
Strand 3	D	232	238	anti-parallel
Strand 4	D	252	256	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	263	265	first strand
Strand 2	D	270	273	anti-parallel
Strand 3	D	288	291	anti-parallel
Strand 4	D	298	299	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LQQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQQ