Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LQV entry

There are 10 chains in PDB entry 9LQV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 461	ASN 1007
B	MET 1	CYS 344
C	GLY 461	ASN 1007
D	MET 1	CYS 344
I	T 18	T 27
J	T 17	A 27
x	C 32	A 61
M	C 1	G 14
y	T 22	A 49
L	C 1	A 13

There are 52 helices in PDB entry 9LQV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	469	474	Right-handed alpha
Helix 2	AA2	A	477	493	Right-handed alpha
Helix 3	AA3	A	499	511	Right-handed alpha
Helix 4	AA4	A	558	570	Right-handed alpha
Helix 5	AA5	A	570	581	Right-handed alpha
Helix 6	AA6	A	664	683	Right-handed alpha
Helix 7	AA7	A	708	717	Right-handed alpha
Helix 8	AA8	A	733	741	Right-handed alpha
Helix 9	AA9	A	749	763	Right-handed alpha
Helix 10	AB1	A	768	777	Right-handed alpha
Helix 11	AB2	A	792	813	Right-handed alpha
Helix 12	AB3	A	824	841	Right-handed alpha
Helix 13	AB4	A	850	858	Right-handed alpha
Helix 14	AB5	A	859	868	Right-handed alpha
Helix 15	AB6	A	872	895	Right-handed alpha
Helix 16	AB7	A	897	902	Right-handed alpha
Helix 17	AB8	A	902	923	Right-handed alpha
Helix 18	AB9	A	933	942	Right-handed alpha
Helix 19	AC1	A	942	951	Right-handed alpha
Helix 20	AC2	A	953	957	Right-handed 310
Helix 21	AC3	A	958	975	Right-handed alpha
Helix 22	AC4	A	982	996	Right-handed alpha
Helix 23	AC5	A	996	1003	Right-handed alpha
Helix 24	AC6	B	11	15	Right-handed 310
Helix 25	AC7	B	168	172	Right-handed 310
Helix 26	AC8	B	308	314	Right-handed alpha
Helix 27	AC9	C	463	474	Right-handed alpha
Helix 28	AD1	C	477	493	Right-handed alpha
Helix 29	AD2	C	499	511	Right-handed alpha
Helix 30	AD3	C	558	570	Right-handed alpha
Helix 31	AD4	C	570	581	Right-handed alpha
Helix 32	AD5	C	664	683	Right-handed alpha
Helix 33	AD6	C	708	716	Right-handed alpha
Helix 34	AD7	C	733	740	Right-handed alpha
Helix 35	AD8	C	749	763	Right-handed alpha
Helix 36	AD9	C	768	777	Right-handed alpha
Helix 37	AE1	C	792	813	Right-handed alpha
Helix 38	AE2	C	822	842	Right-handed alpha
Helix 39	AE3	C	850	858	Right-handed alpha
Helix 40	AE4	C	859	868	Right-handed alpha
Helix 41	AE5	C	873	895	Right-handed alpha
Helix 42	AE6	C	897	902	Right-handed alpha
Helix 43	AE7	C	902	924	Right-handed alpha
Helix 44	AE8	C	933	951	Right-handed alpha
Helix 45	AE9	C	958	975	Right-handed alpha
Helix 46	AF1	C	982	996	Right-handed alpha
Helix 47	AF2	C	996	1002	Right-handed alpha
Helix 48	AF3	C	1003	1005	Right-handed 310
Helix 49	AF4	D	11	13	Right-handed 310
Helix 50	AF5	D	146	150	Right-handed 310
Helix 51	AF6	D	168	172	Right-handed 310
Helix 52	AF7	D	308	313	Right-handed alpha

There are 21 sheets in PDB entry 9LQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	687	688	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	536	first strand
Strand 2	A	555	557	anti-parallel
Strand 3	A	653	658	anti-parallel
Strand 4	A	618	631	anti-parallel
Strand 5	A	592	603	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	536	first strand
Strand 2	A	555	557	anti-parallel
Strand 3	A	653	658	anti-parallel
Strand 4	A	618	631	anti-parallel
Strand 5	A	638	642	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	690	691	first strand
Strand 2	A	694	695	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	28	31	anti-parallel
Strand 3	B	45	51	anti-parallel
Strand 4	B	54	59	anti-parallel
Strand 5	B	2	8	parallel
Strand 6	B	337	343	anti-parallel
Strand 7	B	326	332	anti-parallel
Strand 8	B	318	321	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	80	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	107	116	anti-parallel
Strand 4	B	119	127	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	152	156	anti-parallel
Strand 3	B	181	185	anti-parallel
Strand 4	B	193	196	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	212	first strand
Strand 2	B	215	222	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	246	248	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	212	first strand
Strand 2	B	215	222	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	251	252	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	267	first strand
Strand 2	B	270	274	anti-parallel
Strand 3	B	288	291	anti-parallel
Strand 4	B	298	301	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	555	557	anti-parallel
Strand 3	C	653	658	anti-parallel
Strand 4	C	619	631	anti-parallel
Strand 5	C	639	642	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	536	first strand
Strand 2	C	555	557	anti-parallel
Strand 3	C	653	658	anti-parallel
Strand 4	C	619	631	anti-parallel
Strand 5	C	591	602	anti-parallel
Strand 6	C	698	704	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	50	first strand
Strand 2	D	54	59	anti-parallel
Strand 3	D	5	8	parallel
Strand 4	D	337	343	anti-parallel
Strand 5	D	326	332	anti-parallel
Strand 6	D	318	321	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	24	first strand
Strand 2	D	27	33	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	121	122	parallel
Strand 3	D	112	114	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	79	first strand
Strand 2	D	91	94	anti-parallel
Strand 3	D	107	110	anti-parallel
Strand 4	D	125	127	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	191	195	parallel
Strand 3	D	182	185	anti-parallel
Strand 4	D	152	156	anti-parallel
Strand 5	D	141	145	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	175	177	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	215	219	anti-parallel
Strand 3	D	233	238	anti-parallel
Strand 4	D	247	252	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	265	first strand
Strand 2	D	270	274	anti-parallel
Strand 3	D	287	291	anti-parallel
Strand 4	D	298	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LQV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQV