Analysis of interatomic Contacts of Structural Units in PDB entry:
9LQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LQW entry

There are 4 chains in PDB entry 9LQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 28MET 323
C
 GLN 1SER 129
B
 GLY 28MET 323
D
 GLN 1SER 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9LQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 55Right-handed alpha
Helix 2
AA2
A
64 80Right-handed alpha
Helix 3
AA3
A
81 91Right-handed alpha
Helix 4
AA4
A
98 132Right-handed alpha
Helix 5
AA5
A
147 161Right-handed alpha
Helix 6
AA6
A
161 167Right-handed alpha
Helix 7
AA7
A
172 176Right-handed 310
Helix 8
AA8
A
193 229Right-handed alpha
Helix 9
AA9
A
244 273Right-handed alpha
Helix 10
AB1
A
280 301Right-handed alpha
Helix 11
AB2
A
304 313Right-handed alpha
Helix 12
AB3
A
313 323Right-handed alpha
Helix 13
AB4
C
86 90Right-handed 310
Helix 14
AB5
B
29 55Right-handed alpha
Helix 15
AB6
B
64 80Right-handed alpha
Helix 16
AB7
B
81 91Right-handed alpha
Helix 17
AB8
B
98 132Right-handed alpha
Helix 18
AB9
B
147 161Right-handed alpha
Helix 19
AC1
B
161 167Right-handed alpha
Helix 20
AC2
B
172 176Right-handed 310
Helix 21
AC3
B
193 229Right-handed alpha
Helix 22
AC4
B
244 273Right-handed alpha
Helix 23
AC5
B
280 301Right-handed alpha
Helix 24
AC6
B
304 313Right-handed alpha
Helix 25
AC7
B
313 323Right-handed alpha
Helix 26
AC8
D
86 90Right-handed 310
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There are 6 sheets in PDB entry 9LQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
180 183anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
77 82anti-parallel
Strand 4
C
67 70anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 59first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
32 38anti-parallel
Strand 4
C
93 99anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
180 183anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
77 82anti-parallel
Strand 4
D
67 70anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 59first strand
Strand 2
D
46 51anti-parallel
Strand 3
D
32 38anti-parallel
Strand 4
D
93 99anti-parallel
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