Analysis of interatomic Contacts of Structural Units in PDB entry:
9LR0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LR0 entry

There are 10 chains in PDB entry 9LR0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 461	HIS 1006
B	MET 1	CYS 344
C	GLY 461	ALA 1005
D	MET 1	SER 345
I	T 18	T 27
J	G 18	A 27
x	C 32	C 60
M	C 1	G 14
y	A 23	A 49
L	C 1	T 12

There are 51 helices in PDB entry 9LR0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	463	474	Right-handed alpha
Helix 2	AA2	A	477	493	Right-handed alpha
Helix 3	AA3	A	499	511	Right-handed alpha
Helix 4	AA4	A	558	570	Right-handed alpha
Helix 5	AA5	A	570	581	Right-handed alpha
Helix 6	AA6	A	664	683	Right-handed alpha
Helix 7	AA7	A	708	716	Right-handed alpha
Helix 8	AA8	A	735	739	Right-handed 310
Helix 9	AA9	A	749	763	Right-handed alpha
Helix 10	AB1	A	768	777	Right-handed alpha
Helix 11	AB2	A	792	813	Right-handed alpha
Helix 12	AB3	A	822	842	Right-handed alpha
Helix 13	AB4	A	850	858	Right-handed alpha
Helix 14	AB5	A	859	868	Right-handed alpha
Helix 15	AB6	A	872	895	Right-handed alpha
Helix 16	AB7	A	897	902	Right-handed alpha
Helix 17	AB8	A	902	923	Right-handed alpha
Helix 18	AB9	A	933	942	Right-handed alpha
Helix 19	AC1	A	942	951	Right-handed alpha
Helix 20	AC2	A	953	957	Right-handed 310
Helix 21	AC3	A	958	975	Right-handed alpha
Helix 22	AC4	A	982	995	Right-handed alpha
Helix 23	AC5	A	1001	1005	Right-handed 310
Helix 24	AC6	B	168	172	Right-handed 310
Helix 25	AC7	B	308	314	Right-handed alpha
Helix 26	AC8	C	463	474	Right-handed alpha
Helix 27	AC9	C	479	493	Right-handed alpha
Helix 28	AD1	C	499	511	Right-handed alpha
Helix 29	AD2	C	558	570	Right-handed alpha
Helix 30	AD3	C	570	581	Right-handed alpha
Helix 31	AD4	C	664	683	Right-handed alpha
Helix 32	AD5	C	708	716	Right-handed alpha
Helix 33	AD6	C	733	741	Right-handed alpha
Helix 34	AD7	C	749	763	Right-handed alpha
Helix 35	AD8	C	768	777	Right-handed alpha
Helix 36	AD9	C	792	813	Right-handed alpha
Helix 37	AE1	C	822	841	Right-handed alpha
Helix 38	AE2	C	850	858	Right-handed alpha
Helix 39	AE3	C	859	868	Right-handed alpha
Helix 40	AE4	C	872	895	Right-handed alpha
Helix 41	AE5	C	897	902	Right-handed alpha
Helix 42	AE6	C	902	923	Right-handed alpha
Helix 43	AE7	C	933	942	Right-handed alpha
Helix 44	AE8	C	942	950	Right-handed alpha
Helix 45	AE9	C	958	975	Right-handed alpha
Helix 46	AF1	C	982	996	Right-handed alpha
Helix 47	AF2	C	996	1003	Right-handed alpha
Helix 48	AF3	D	11	15	Right-handed 310
Helix 49	AF4	D	163	167	Right-handed 310
Helix 50	AF5	D	168	172	Right-handed 310
Helix 51	AF6	D	308	313	Right-handed alpha

There are 21 sheets in PDB entry 9LR0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	687	691	anti-parallel
Strand 3	A	694	706	anti-parallel
Strand 4	A	591	603	parallel
Strand 5	A	618	631	anti-parallel
Strand 6	A	653	658	anti-parallel
Strand 7	A	554	557	anti-parallel
Strand 8	A	534	536	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	687	691	anti-parallel
Strand 3	A	694	706	anti-parallel
Strand 4	A	591	603	parallel
Strand 5	A	618	631	anti-parallel
Strand 6	A	639	642	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	340	343	anti-parallel
Strand 3	B	326	332	anti-parallel
Strand 4	B	318	321	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	340	343	anti-parallel
Strand 3	B	326	332	anti-parallel
Strand 4	B	337	338	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	54	59	parallel
Strand 3	B	46	51	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	23	first strand
Strand 2	B	28	31	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	119	122	parallel
Strand 3	B	112	116	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	90	94	anti-parallel
Strand 3	B	107	110	anti-parallel
Strand 4	B	125	127	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	146	first strand
Strand 2	B	151	155	anti-parallel
Strand 3	B	182	185	anti-parallel
Strand 4	B	194	195	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	232	239	anti-parallel
Strand 4	B	246	256	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	266	first strand
Strand 2	B	270	274	anti-parallel
Strand 3	B	287	292	anti-parallel
Strand 4	B	297	299	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	282	283	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	687	691	anti-parallel
Strand 3	C	694	704	anti-parallel
Strand 4	C	591	601	parallel
Strand 5	C	620	631	anti-parallel
Strand 6	C	653	658	anti-parallel
Strand 7	C	554	557	anti-parallel
Strand 8	C	534	536	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	687	691	anti-parallel
Strand 3	C	694	704	anti-parallel
Strand 4	C	591	601	parallel
Strand 5	C	620	631	anti-parallel
Strand 6	C	638	642	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	24	first strand
Strand 2	D	27	30	anti-parallel
Strand 3	D	46	51	anti-parallel
Strand 4	D	54	59	anti-parallel
Strand 5	D	2	8	parallel
Strand 6	D	337	343	anti-parallel
Strand 7	D	326	332	anti-parallel
Strand 8	D	318	321	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	90	94	anti-parallel
Strand 3	D	107	115	anti-parallel
Strand 4	D	120	125	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	191	195	parallel
Strand 3	D	182	185	anti-parallel
Strand 4	D	150	156	anti-parallel
Strand 5	D	141	147	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	175	177	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	211	first strand
Strand 2	D	215	223	anti-parallel
Strand 3	D	233	238	anti-parallel
Strand 4	D	247	252	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	265	first strand
Strand 2	D	270	274	anti-parallel
Strand 3	D	287	291	anti-parallel
Strand 4	D	298	299	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LR0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LR0