Analysis of interatomic Contacts of Structural Units in PDB entry:
9LR7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LR7 entry

There are 4 chains in PDB entry 9LR7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 30	PRO 440
A	ALA 30	PRO 440
C	ALA 30	LYS 432
D	SER 31	ILE 215

There are 26 helices in PDB entry 9LR7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	46	50	Right-handed 310
Helix 2	AA2	B	76	86	Right-handed alpha
Helix 3	AA3	B	89	101	Right-handed alpha
Helix 4	AA4	B	218	222	Right-handed 310
Helix 5	AA5	B	269	274	Right-handed alpha
Helix 6	AA6	B	275	277	Right-handed 310
Helix 7	AA7	B	364	368	Right-handed 310
Helix 8	AA8	A	76	86	Right-handed alpha
Helix 9	AA9	A	89	101	Right-handed alpha
Helix 10	AB1	A	218	222	Right-handed 310
Helix 11	AB2	A	269	274	Right-handed alpha
Helix 12	AB3	A	275	277	Right-handed 310
Helix 13	AB4	A	364	368	Right-handed 310
Helix 14	AB5	C	76	86	Right-handed alpha
Helix 15	AB6	C	89	101	Right-handed alpha
Helix 16	AB7	C	218	222	Right-handed 310
Helix 17	AB8	C	239	242	Right-handed 310
Helix 18	AB9	C	269	274	Right-handed alpha
Helix 19	AC1	C	275	277	Right-handed 310
Helix 20	AC2	C	364	368	Right-handed 310
Helix 21	AC3	D	76	86	Right-handed alpha
Helix 22	AC4	D	89	101	Right-handed alpha
Helix 23	AC5	D	218	222	Right-handed 310
Helix 24	AC6	D	269	274	Right-handed alpha
Helix 25	AC7	D	275	277	Right-handed 310
Helix 26	AC8	D	364	368	Right-handed 310

There are 37 sheets in PDB entry 9LR7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	119	128	anti-parallel
Strand 3	B	31	37	anti-parallel
Strand 4	B	173	176	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	39	41	anti-parallel
Strand 3	B	179	182	parallel
Strand 4	B	150	152	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	109	112	first strand
Strand 2	B	70	75	anti-parallel
Strand 3	B	138	145	anti-parallel
Strand 4	B	157	160	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	194	first strand
Strand 2	B	206	214	anti-parallel
Strand 3	B	280	289	anti-parallel
Strand 4	B	235	246	anti-parallel
Strand 5	B	249	250	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	259	first strand
Strand 2	B	263	268	anti-parallel
Strand 3	B	225	231	anti-parallel
Strand 4	B	299	307	anti-parallel
Strand 5	B	311	318	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	384	first strand
Strand 2	B	321	329	anti-parallel
Strand 3	B	426	430	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	371	372	first strand
Strand 2	B	341	346	anti-parallel
Strand 3	B	387	395	anti-parallel
Strand 4	B	407	411	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	354	first strand
Strand 2	B	359	362	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	418	first strand
Strand 2	B	421	422	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	119	128	anti-parallel
Strand 3	A	31	37	anti-parallel
Strand 4	A	173	176	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	39	41	anti-parallel
Strand 3	A	179	182	parallel
Strand 4	A	150	152	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	112	first strand
Strand 2	A	70	75	anti-parallel
Strand 3	A	138	145	anti-parallel
Strand 4	A	157	160	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	194	first strand
Strand 2	A	206	214	anti-parallel
Strand 3	A	280	289	anti-parallel
Strand 4	A	235	246	anti-parallel
Strand 5	A	249	250	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	260	first strand
Strand 2	A	263	268	anti-parallel
Strand 3	A	225	231	anti-parallel
Strand 4	A	299	307	anti-parallel
Strand 5	A	311	318	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	378	384	first strand
Strand 2	A	321	329	anti-parallel
Strand 3	A	426	430	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	341	346	anti-parallel
Strand 3	A	387	395	anti-parallel
Strand 4	A	407	411	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	354	first strand
Strand 2	A	359	362	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	418	first strand
Strand 2	A	421	422	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	128	first strand
Strand 2	C	31	37	anti-parallel
Strand 3	C	173	176	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	39	41	anti-parallel
Strand 3	C	179	182	parallel
Strand 4	C	150	152	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	112	first strand
Strand 2	C	70	75	anti-parallel
Strand 3	C	138	145	anti-parallel
Strand 4	C	157	160	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	194	first strand
Strand 2	C	206	214	anti-parallel
Strand 3	C	280	289	anti-parallel
Strand 4	C	235	237	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	194	first strand
Strand 2	C	206	214	anti-parallel
Strand 3	C	280	289	anti-parallel
Strand 4	C	243	246	anti-parallel
Strand 5	C	249	250	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	259	first strand
Strand 2	C	263	268	anti-parallel
Strand 3	C	225	231	anti-parallel
Strand 4	C	299	307	anti-parallel
Strand 5	C	312	318	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	384	first strand
Strand 2	C	321	329	anti-parallel
Strand 3	C	426	430	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	371	372	first strand
Strand 2	C	341	346	anti-parallel
Strand 3	C	387	395	anti-parallel
Strand 4	C	407	411	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	354	first strand
Strand 2	C	359	362	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	418	first strand
Strand 2	C	421	422	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	124	127	first strand
Strand 2	D	32	36	anti-parallel
Strand 3	D	175	176	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	39	41	first strand
Strand 2	D	179	182	parallel
Strand 3	D	150	152	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	109	112	first strand
Strand 2	D	70	75	anti-parallel
Strand 3	D	138	145	anti-parallel
Strand 4	D	157	160	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	194	first strand
Strand 2	D	206	214	anti-parallel
Strand 3	D	280	289	anti-parallel
Strand 4	D	235	246	anti-parallel
Strand 5	D	249	250	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	260	first strand
Strand 2	D	263	268	anti-parallel
Strand 3	D	225	231	anti-parallel
Strand 4	D	299	307	anti-parallel
Strand 5	D	311	318	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	378	384	first strand
Strand 2	D	321	329	anti-parallel
Strand 3	D	426	430	parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	372	first strand
Strand 2	D	341	345	anti-parallel
Strand 3	D	387	395	anti-parallel
Strand 4	D	407	411	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	354	first strand
Strand 2	D	359	362	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	418	first strand
Strand 2	D	421	422	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LR7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LR7