Analysis of interatomic Contacts of Structural Units in PDB entry:
9LRI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LRI entry

There are 3 chains in PDB entry 9LRI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 38ARG 184
C
 C 1 C 7
A
 THR 32GLY 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9LRI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
38 55Right-handed alpha
Helix 2
AA2
B
77 83Right-handed alpha
Helix 3
AA3
B
86 105Right-handed alpha
Helix 4
AA4
B
116 139Right-handed alpha
Helix 5
AA5
B
149 160Right-handed alpha
Helix 6
AA6
B
173 176Right-handed 310
Helix 7
AA7
A
37 55Right-handed alpha
Helix 8
AA8
A
77 83Right-handed alpha
Helix 9
AA9
A
86 105Right-handed alpha
Helix 10
AB1
A
116 140Right-handed alpha
Helix 11
AB2
A
149 160Right-handed alpha
Helix 12
AB3
A
173 177Right-handed 310
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There are 4 sheets in PDB entry 9LRI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 65first strand
Strand 2
B
68 74anti-parallel
Strand 3
B
109 114parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 147first strand
Strand 2
B
178 183anti-parallel
Strand 3
B
166 171anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 65first strand
Strand 2
A
68 74anti-parallel
Strand 3
A
111 113parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
178 183anti-parallel
Strand 3
A
166 171anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il