Analysis of interatomic Contacts of Structural Units in PDB entry:
9LRJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LRJ entry

There are 7 chains in PDB entry 9LRJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 6	LEU 477
B	SER 4	LEU 477
C	SER 4	LEU 477
D	SER 4	LEU 477
E	SER 4	LEU 477
F	SER 4	LEU 477
G	SER 4	LEU 477

There are153 helices in PDB entry 9LRJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	34	Right-handed alpha
Helix 2	AA2	A	50	58	Right-handed alpha
Helix 3	AA3	A	85	106	Right-handed alpha
Helix 4	AA4	A	120	123	Right-handed 310
Helix 5	AA5	A	124	130	Right-handed alpha
Helix 6	AA6	A	142	159	Right-handed alpha
Helix 7	AA7	A	162	166	Right-handed 310
Helix 8	AA8	A	179	183	Right-handed 310
Helix 9	AA9	A	184	188	Right-handed 310
Helix 10	AB1	A	192	207	Right-handed alpha
Helix 11	AB2	A	220	230	Right-handed alpha
Helix 12	AB3	A	230	235	Right-handed alpha
Helix 13	AB4	A	257	265	Right-handed alpha
Helix 14	AB5	A	283	297	Right-handed alpha
Helix 15	AB6	A	335	340	Right-handed alpha
Helix 16	AB7	A	352	358	Right-handed alpha
Helix 17	AB8	A	370	379	Right-handed alpha
Helix 18	AB9	A	392	402	Right-handed alpha
Helix 19	AC1	A	420	433	Right-handed alpha
Helix 20	AC2	A	434	454	Right-handed alpha
Helix 21	AC3	A	459	477	Right-handed alpha
Helix 22	AC4	B	15	34	Right-handed alpha
Helix 23	AC5	B	51	59	Right-handed alpha
Helix 24	AC6	B	76	80	Right-handed 310
Helix 25	AC7	B	85	107	Right-handed alpha
Helix 26	AC8	B	120	123	Right-handed 310
Helix 27	AC9	B	124	131	Right-handed alpha
Helix 28	AD1	B	142	159	Right-handed alpha
Helix 29	AD2	B	162	166	Right-handed 310
Helix 30	AD3	B	179	183	Right-handed 310
Helix 31	AD4	B	184	188	Right-handed 310
Helix 32	AD5	B	192	207	Right-handed alpha
Helix 33	AD6	B	220	230	Right-handed alpha
Helix 34	AD7	B	230	235	Right-handed alpha
Helix 35	AD8	B	257	265	Right-handed alpha
Helix 36	AD9	B	283	297	Right-handed alpha
Helix 37	AE1	B	335	340	Right-handed alpha
Helix 38	AE2	B	352	358	Right-handed alpha
Helix 39	AE3	B	370	379	Right-handed alpha
Helix 40	AE4	B	392	402	Right-handed alpha
Helix 41	AE5	B	420	431	Right-handed alpha
Helix 42	AE6	B	434	456	Right-handed alpha
Helix 43	AE7	B	459	477	Right-handed alpha
Helix 44	AE8	C	15	34	Right-handed alpha
Helix 45	AE9	C	49	54	Right-handed alpha
Helix 46	AF1	C	76	80	Right-handed 310
Helix 47	AF2	C	85	108	Right-handed alpha
Helix 48	AF3	C	120	123	Right-handed 310
Helix 49	AF4	C	124	131	Right-handed alpha
Helix 50	AF5	C	142	159	Right-handed alpha
Helix 51	AF6	C	162	166	Right-handed 310
Helix 52	AF7	C	179	183	Right-handed 310
Helix 53	AF8	C	184	189	Right-handed 310
Helix 54	AF9	C	192	207	Right-handed alpha
Helix 55	AG1	C	220	230	Right-handed alpha
Helix 56	AG2	C	257	265	Right-handed alpha
Helix 57	AG3	C	283	297	Right-handed alpha
Helix 58	AG4	C	327	332	Right-handed 310
Helix 59	AG5	C	335	340	Right-handed alpha
Helix 60	AG6	C	352	358	Right-handed alpha
Helix 61	AG7	C	370	379	Right-handed alpha
Helix 62	AG8	C	392	402	Right-handed alpha
Helix 63	AG9	C	420	433	Right-handed alpha
Helix 64	AH1	C	434	454	Right-handed alpha
Helix 65	AH2	C	459	475	Right-handed alpha
Helix 66	AH3	D	15	34	Right-handed alpha
Helix 67	AH4	D	47	55	Right-handed alpha
Helix 68	AH5	D	76	80	Right-handed 310
Helix 69	AH6	D	85	106	Right-handed alpha
Helix 70	AH7	D	120	123	Right-handed 310
Helix 71	AH8	D	124	131	Right-handed alpha
Helix 72	AH9	D	142	159	Right-handed alpha
Helix 73	AI1	D	179	183	Right-handed 310
Helix 74	AI2	D	184	189	Right-handed 310
Helix 75	AI3	D	192	207	Right-handed alpha
Helix 76	AI4	D	220	230	Right-handed alpha
Helix 77	AI5	D	230	235	Right-handed alpha
Helix 78	AI6	D	258	265	Right-handed alpha
Helix 79	AI7	D	283	297	Right-handed alpha
Helix 80	AI8	D	327	332	Right-handed 310
Helix 81	AI9	D	335	340	Right-handed alpha
Helix 82	AJ1	D	352	358	Right-handed alpha
Helix 83	AJ2	D	370	379	Right-handed alpha
Helix 84	AJ3	D	392	402	Right-handed alpha
Helix 85	AJ4	D	420	433	Right-handed alpha
Helix 86	AJ5	D	434	456	Right-handed alpha
Helix 87	AJ6	D	459	474	Right-handed alpha
Helix 88	AJ7	E	15	34	Right-handed alpha
Helix 89	AJ8	E	47	57	Right-handed alpha
Helix 90	AJ9	E	76	80	Right-handed 310
Helix 91	AK1	E	85	108	Right-handed alpha
Helix 92	AK2	E	120	123	Right-handed 310
Helix 93	AK3	E	124	131	Right-handed alpha
Helix 94	AK4	E	142	159	Right-handed alpha
Helix 95	AK5	E	162	166	Right-handed 310
Helix 96	AK6	E	179	183	Right-handed 310
Helix 97	AK7	E	184	189	Right-handed 310
Helix 98	AK8	E	193	207	Right-handed alpha
Helix 99	AK9	E	220	230	Right-handed alpha
Helix 100	AL1	E	230	235	Right-handed alpha
Helix 101	AL2	E	257	265	Right-handed alpha
Helix 102	AL3	E	283	297	Right-handed alpha
Helix 103	AL4	E	327	332	Right-handed 310
Helix 104	AL5	E	335	340	Right-handed alpha
Helix 105	AL6	E	352	358	Right-handed alpha
Helix 106	AL7	E	370	379	Right-handed alpha
Helix 107	AL8	E	392	402	Right-handed alpha
Helix 108	AL9	E	420	433	Right-handed alpha
Helix 109	AM1	E	434	456	Right-handed alpha
Helix 110	AM2	E	459	475	Right-handed alpha
Helix 111	AM3	F	15	34	Right-handed alpha
Helix 112	AM4	F	49	58	Right-handed alpha
Helix 113	AM5	F	85	108	Right-handed alpha
Helix 114	AM6	F	120	123	Right-handed 310
Helix 115	AM7	F	124	132	Right-handed alpha
Helix 116	AM8	F	142	159	Right-handed alpha
Helix 117	AM9	F	162	166	Right-handed 310
Helix 118	AN1	F	179	183	Right-handed 310
Helix 119	AN2	F	184	188	Right-handed 310
Helix 120	AN3	F	192	207	Right-handed alpha
Helix 121	AN4	F	220	230	Right-handed alpha
Helix 122	AN5	F	230	235	Right-handed alpha
Helix 123	AN6	F	257	265	Right-handed alpha
Helix 124	AN7	F	283	297	Right-handed alpha
Helix 125	AN8	F	335	340	Right-handed alpha
Helix 126	AN9	F	352	358	Right-handed alpha
Helix 127	AO1	F	370	379	Right-handed alpha
Helix 128	AO2	F	392	402	Right-handed alpha
Helix 129	AO3	F	420	433	Right-handed alpha
Helix 130	AO4	F	434	456	Right-handed alpha
Helix 131	AO5	F	459	472	Right-handed alpha
Helix 132	AO6	G	15	18	Right-handed 310
Helix 133	AO7	G	19	34	Right-handed alpha
Helix 134	AO8	G	50	58	Right-handed alpha
Helix 135	AO9	G	85	96	Right-handed alpha
Helix 136	AP1	G	97	105	Right-handed alpha
Helix 137	AP2	G	121	124	Right-handed 310
Helix 138	AP3	G	125	130	Right-handed alpha
Helix 139	AP4	G	142	159	Right-handed alpha
Helix 140	AP5	G	179	183	Right-handed 310
Helix 141	AP6	G	184	188	Right-handed 310
Helix 142	AP7	G	192	207	Right-handed alpha
Helix 143	AP8	G	220	230	Right-handed alpha
Helix 144	AP9	G	230	235	Right-handed alpha
Helix 145	AQ1	G	258	264	Right-handed alpha
Helix 146	AQ2	G	283	297	Right-handed alpha
Helix 147	AQ3	G	335	340	Right-handed alpha
Helix 148	AQ4	G	352	358	Right-handed alpha
Helix 149	AQ5	G	370	379	Right-handed alpha
Helix 150	AQ6	G	392	402	Right-handed alpha
Helix 151	AQ7	G	420	434	Right-handed alpha
Helix 152	AQ8	G	434	456	Right-handed alpha
Helix 153	AQ9	G	459	473	Right-handed alpha

There are 22 sheets in PDB entry 9LRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	12	first strand
Strand 2	A	36	42	parallel
Strand 3	A	67	71	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	134	139	parallel
Strand 3	A	211	213	parallel
Strand 4	A	241	243	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	171	first strand
Strand 2	A	177	178	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	348	first strand
Strand 2	A	300	305	parallel
Strand 3	A	271	275	parallel
Strand 4	A	362	367	parallel
Strand 5	A	384	386	parallel
Strand 6	A	407	408	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	71	first strand
Strand 2	B	36	42	parallel
Strand 3	B	7	12	parallel
Strand 4	B	114	118	parallel
Strand 5	B	134	139	parallel
Strand 6	B	211	213	parallel
Strand 7	B	241	243	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	171	first strand
Strand 2	B	177	178	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	348	first strand
Strand 2	B	300	305	parallel
Strand 3	B	271	275	parallel
Strand 4	B	362	367	parallel
Strand 5	B	384	386	parallel
Strand 6	B	407	408	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	72	first strand
Strand 2	C	36	43	parallel
Strand 3	C	7	12	parallel
Strand 4	C	114	118	parallel
Strand 5	C	134	139	parallel
Strand 6	C	211	213	parallel
Strand 7	C	241	243	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	177	178	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	347	first strand
Strand 2	C	300	304	parallel
Strand 3	C	271	275	parallel
Strand 4	C	362	367	parallel
Strand 5	C	384	386	parallel
Strand 6	C	407	408	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	36	42	parallel
Strand 3	D	7	12	parallel
Strand 4	D	114	118	parallel
Strand 5	D	134	139	parallel
Strand 6	D	211	213	parallel
Strand 7	D	241	243	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	171	first strand
Strand 2	D	177	178	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	348	first strand
Strand 2	D	300	305	parallel
Strand 3	D	271	275	parallel
Strand 4	D	362	367	parallel
Strand 5	D	384	385	parallel
Strand 6	D	407	408	parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	71	first strand
Strand 2	E	35	42	parallel
Strand 3	E	6	12	parallel
Strand 4	E	115	118	parallel
Strand 5	E	135	138	parallel
Strand 6	E	211	212	parallel
Strand 7	E	241	242	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	170	171	first strand
Strand 2	E	177	178	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	344	348	first strand
Strand 2	E	300	305	parallel
Strand 3	E	271	275	parallel
Strand 4	E	362	367	parallel
Strand 5	E	384	386	parallel
Strand 6	E	407	408	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	71	first strand
Strand 2	F	36	42	parallel
Strand 3	F	7	12	parallel
Strand 4	F	114	118	parallel
Strand 5	F	134	139	parallel
Strand 6	F	211	213	parallel
Strand 7	F	241	243	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	171	first strand
Strand 2	F	177	178	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	344	348	first strand
Strand 2	F	300	305	parallel
Strand 3	F	271	275	parallel
Strand 4	F	362	367	parallel
Strand 5	F	384	386	parallel
Strand 6	F	407	408	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	72	first strand
Strand 2	G	40	43	parallel
Strand 3	G	8	12	parallel
Strand 4	G	114	118	parallel
Strand 5	G	134	139	parallel
Strand 6	G	211	213	parallel
Strand 7	G	241	243	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	170	171	first strand
Strand 2	G	177	178	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	344	348	first strand
Strand 2	G	300	305	parallel
Strand 3	G	271	275	parallel
Strand 4	G	362	367	parallel
Strand 5	G	384	386	parallel
Strand 6	G	407	408	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LRJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LRJ