Analysis of interatomic Contacts of Structural Units in PDB entry:
9LRM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LRM entry

There are 35 chains in PDB entry 9LRM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 2	ASP 770
B	PRO 1	PRO 1
B	GLY 3	PRO 4
B	GLY 6	PRO 7
B	GLY 9	PRO 10
B	GLY 12	PRO 13
B	GLY 15	PRO 16
B	GLY 18	PRO 19
B	GLY 21	PRO 22
B	GLY 24	PRO 25
B	GLY 27	PRO 28
B	GLY 30	GLY 30
D	PRO 1	PRO 1
D	GLY 3	PRO 4
D	GLY 6	PRO 7
D	GLY 9	PRO 10
D	GLY 12	PRO 13
D	GLY 15	PRO 16
D	GLY 18	PRO 19
D	GLY 21	PRO 22
D	GLY 24	PRO 25
D	GLY 27	PRO 28
D	GLY 30	GLY 30
C	PRO 1	PRO 1
C	GLY 3	PRO 4
C	GLY 6	PRO 7
C	GLY 9	PRO 10
C	GLY 12	PRO 13
C	GLY 15	PRO 16
C	GLY 18	PRO 19
C	GLY 21	PRO 22
C	GLY 24	PRO 25
C	GLY 27	PRO 28
C	GLY 30	GLY 30
G	SER 5	ASP 770

There are 75 helices in PDB entry 9LRM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	16	Right-handed alpha
Helix 2	AA2	A	17	28	Right-handed alpha
Helix 3	AA3	A	29	33	Right-handed 310
Helix 4	AA4	A	40	49	Right-handed alpha
Helix 5	AA5	A	49	64	Right-handed alpha
Helix 6	AA6	A	65	67	Right-handed 310
Helix 7	AA7	A	74	91	Right-handed alpha
Helix 8	AA8	A	95	100	Right-handed alpha
Helix 9	AA9	A	100	105	Right-handed alpha
Helix 10	AB1	A	106	117	Right-handed alpha
Helix 11	AB2	A	124	138	Right-handed alpha
Helix 12	AB3	A	144	161	Right-handed alpha
Helix 13	AB4	A	161	166	Right-handed alpha
Helix 14	AB5	A	168	194	Right-handed alpha
Helix 15	AB6	A	196	200	Right-handed 310
Helix 16	AB7	A	207	218	Right-handed alpha
Helix 17	AB8	A	226	242	Right-handed alpha
Helix 18	AB9	A	248	261	Right-handed alpha
Helix 19	AC1	A	265	279	Right-handed alpha
Helix 20	AC2	A	290	303	Right-handed alpha
Helix 21	AC3	A	323	346	Right-handed alpha
Helix 22	AC4	A	355	359	Right-handed 310
Helix 23	AC5	A	367	372	Right-handed alpha
Helix 24	AC6	A	373	378	Right-handed alpha
Helix 25	AC7	A	408	426	Right-handed alpha
Helix 26	AC8	A	434	441	Right-handed 310
Helix 27	AC9	A	442	454	Right-handed alpha
Helix 28	AD1	A	465	471	Right-handed alpha
Helix 29	AD2	A	482	488	Right-handed alpha
Helix 30	AD3	A	496	511	Right-handed alpha
Helix 31	AD4	A	512	525	Right-handed alpha
Helix 32	AD5	A	527	540	Right-handed alpha
Helix 33	AD6	A	542	558	Right-handed alpha
Helix 34	AD7	A	568	573	Right-handed 310
Helix 35	AD8	A	579	592	Right-handed alpha
Helix 36	AD9	A	622	643	Right-handed alpha
Helix 37	AE1	A	646	652	Right-handed 310
Helix 38	AE2	G	9	14	Right-handed alpha
Helix 39	AE3	G	17	26	Right-handed alpha
Helix 40	AE4	G	29	33	Right-handed 310
Helix 41	AE5	G	40	48	Right-handed alpha
Helix 42	AE6	G	49	63	Right-handed alpha
Helix 43	AE7	G	64	67	Right-handed 310
Helix 44	AE8	G	74	92	Right-handed alpha
Helix 45	AE9	G	95	100	Right-handed alpha
Helix 46	AF1	G	107	117	Right-handed alpha
Helix 47	AF2	G	124	138	Right-handed alpha
Helix 48	AF3	G	144	161	Right-handed alpha
Helix 49	AF4	G	161	168	Right-handed alpha
Helix 50	AF5	G	168	194	Right-handed alpha
Helix 51	AF6	G	196	200	Right-handed 310
Helix 52	AF7	G	207	218	Right-handed alpha
Helix 53	AF8	G	226	241	Right-handed alpha
Helix 54	AF9	G	242	244	Right-handed 310
Helix 55	AG1	G	248	261	Right-handed alpha
Helix 56	AG2	G	265	279	Right-handed alpha
Helix 57	AG3	G	290	302	Right-handed alpha
Helix 58	AG4	G	323	346	Right-handed alpha
Helix 59	AG5	G	355	359	Right-handed 310
Helix 60	AG6	G	367	372	Right-handed 310
Helix 61	AG7	G	373	378	Right-handed alpha
Helix 62	AG8	G	408	426	Right-handed alpha
Helix 63	AG9	G	437	441	Right-handed 310
Helix 64	AH1	G	442	455	Right-handed alpha
Helix 65	AH2	G	465	470	Right-handed alpha
Helix 66	AH3	G	482	488	Right-handed alpha
Helix 67	AH4	G	496	511	Right-handed alpha
Helix 68	AH5	G	512	525	Right-handed alpha
Helix 69	AH6	G	527	540	Right-handed alpha
Helix 70	AH7	G	541	558	Right-handed alpha
Helix 71	AH8	G	559	562	Right-handed 310
Helix 72	AH9	G	568	573	Right-handed 310
Helix 73	AI1	G	579	592	Right-handed alpha
Helix 74	AI2	G	622	643	Right-handed alpha
Helix 75	AI3	G	646	651	Right-handed 310

There are 8 sheets in PDB entry 9LRM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	309	first strand
Strand 2	A	314	318	anti-parallel
Strand 3	A	360	365	parallel
Strand 4	A	394	398	parallel
Strand 5	A	386	389	anti-parallel
Strand 6	D	26	27	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	602	first strand
Strand 2	A	607	619	anti-parallel
Strand 3	A	666	676	anti-parallel
Strand 4	A	653	661	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	696	699	first strand
Strand 2	A	759	769	parallel
Strand 3	A	744	754	anti-parallel
Strand 4	A	718	725	anti-parallel
Strand 5	A	729	731	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	704	705	first strand
Strand 2	A	737	738	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	305	309	first strand
Strand 2	G	314	318	anti-parallel
Strand 3	G	360	365	parallel
Strand 4	G	394	398	parallel
Strand 5	G	387	389	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	593	602	first strand
Strand 2	G	607	619	anti-parallel
Strand 3	G	666	677	anti-parallel
Strand 4	G	653	661	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	696	698	first strand
Strand 2	G	759	768	parallel
Strand 3	G	744	754	anti-parallel
Strand 4	G	718	724	anti-parallel
Strand 5	G	730	731	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	703	704	first strand
Strand 2	G	738	739	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LRM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LRM