Analysis of interatomic Contacts of Structural Units in PDB entry:
9LRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LRY entry

There are 3 chains in PDB entry 9LRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 279
C
 SER 17TYR 241
B
 VAL 7VAL 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9LRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 33Right-handed alpha
Helix 2
AA2
A
42 98Right-handed alpha
Helix 3
AA3
A
103 128Right-handed alpha
Helix 4
AA4
A
188 243Right-handed alpha
Helix 5
AA5
A
245 274Right-handed alpha
Helix 6
AA6
A
275 279Right-handed 310
Helix 7
AA7
C
18 25Right-handed alpha
Helix 8
AA8
C
26 31Right-handed 310
Helix 9
AA9
C
50 53Right-handed 310
Helix 10
AB1
C
83 87Right-handed 310
Helix 11
AB2
C
150 152Right-handed 310
Helix 12
AB3
C
183 185Right-handed 310
Helix 13
AB4
C
192 201Right-handed alpha
Helix 14
AB5
C
201 237Right-handed alpha
Helix 15
AB6
C
238 241Right-handed 310
Helix 16
AB7
B
25 42Right-handed alpha
Helix 17
AB8
B
51 57Right-handed alpha
Helix 18
AB9
B
58 60Right-handed 310
Helix 19
AC1
B
61 100Right-handed alpha
Helix 20
AC2
B
107 146Right-handed alpha
Helix 21
AC3
B
151 154Right-handed 310
Helix 22
AC4
B
155 176Right-handed alpha
Helix 23
AC5
B
181 190Right-handed alpha
Helix 24
AC6
B
194 197Right-handed 310
Helix 25
AC7
B
198 220Right-handed alpha
Helix 26
AC8
B
222 246Right-handed alpha
Helix 27
AC9
B
249 263Right-handed alpha
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There are 3 sheets in PDB entry 9LRY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
133 134anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
160 163anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 57first strand
Strand 2
C
41 48anti-parallel
Strand 3
C
68 76anti-parallel
Strand 4
C
89 99anti-parallel
Strand 5
C
117 128anti-parallel
Strand 6
C
133 141anti-parallel
Strand 7
C
154 160anti-parallel
Strand 8
C
180 181anti-parallel
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