Analysis of interatomic Contacts of Structural Units in PDB entry:
9LS0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LS0 entry

There are 2 chains in PDB entry 9LS0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 281
B
 LEU 15GLU 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 9LS0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 33Right-handed alpha
Helix 2
AA2
A
42 98Right-handed alpha
Helix 3
AA3
A
103 128Right-handed alpha
Helix 4
AA4
A
188 243Right-handed alpha
Helix 5
AA5
A
245 274Right-handed alpha
Helix 6
AA6
A
275 281Right-handed 310
Helix 7
AA7
B
25 42Right-handed alpha
Helix 8
AA8
B
51 57Right-handed alpha
Helix 9
AA9
B
58 60Right-handed 310
Helix 10
AB1
B
61 99Right-handed alpha
Helix 11
AB2
B
107 146Right-handed alpha
Helix 12
AB3
B
151 154Right-handed 310
Helix 13
AB4
B
155 176Right-handed alpha
Helix 14
AB5
B
178 190Right-handed alpha
Helix 15
AB6
B
194 197Right-handed 310
Helix 16
AB7
B
198 220Right-handed alpha
Helix 17
AB8
B
222 246Right-handed alpha
Helix 18
AB9
B
249 263Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9LS0. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 130first strand
Strand 2
A
133 134anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 152first strand
Strand 2
A
160 163anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il