Analysis of interatomic Contacts of Structural Units in PDB entry:
9LSJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LSJ entry

There are 5 chains in PDB entry 9LSJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 16	ILE 446
B	SER 16	ILE 446
C	LYS 27	PHE 691
D	GLU 1	GLU 229
E	GLU 274	ILE 506

There are 61 helices in PDB entry 9LSJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	45	Right-handed alpha
Helix 2	AA2	A	50	70	Right-handed alpha
Helix 3	AA3	A	74	79	Right-handed alpha
Helix 4	AA4	A	81	96	Right-handed alpha
Helix 5	AA5	A	100	112	Right-handed alpha
Helix 6	AA6	A	115	130	Right-handed alpha
Helix 7	AA7	A	131	132	Right-handed 310
Helix 8	AA8	A	133	135	Right-handed 310
Helix 9	AA9	A	136	143	Right-handed alpha
Helix 10	AB1	A	143	166	Right-handed alpha
Helix 11	AB2	A	169	177	Right-handed alpha
Helix 12	AB3	A	177	183	Right-handed alpha
Helix 13	AB4	A	190	202	Right-handed alpha
Helix 14	AB5	A	204	237	Right-handed alpha
Helix 15	AB6	A	264	289	Right-handed alpha
Helix 16	AB7	A	299	315	Right-handed alpha
Helix 17	AB8	A	318	335	Right-handed alpha
Helix 18	AB9	A	336	348	Right-handed alpha
Helix 19	AC1	A	350	357	Right-handed alpha
Helix 20	AC2	A	359	384	Right-handed alpha
Helix 21	AC3	A	389	394	Right-handed alpha
Helix 22	AC4	A	402	415	Right-handed alpha
Helix 23	AC5	A	419	446	Right-handed alpha
Helix 24	AC6	B	28	45	Right-handed alpha
Helix 25	AC7	B	50	71	Right-handed alpha
Helix 26	AC8	B	72	79	Right-handed alpha
Helix 27	AC9	B	81	96	Right-handed alpha
Helix 28	AD1	B	100	112	Right-handed alpha
Helix 29	AD2	B	115	131	Right-handed alpha
Helix 30	AD3	B	133	141	Right-handed alpha
Helix 31	AD4	B	143	167	Right-handed alpha
Helix 32	AD5	B	169	177	Right-handed alpha
Helix 33	AD6	B	177	182	Right-handed alpha
Helix 34	AD7	B	190	201	Right-handed alpha
Helix 35	AD8	B	204	237	Right-handed alpha
Helix 36	AD9	B	264	289	Right-handed alpha
Helix 37	AE1	B	299	315	Right-handed alpha
Helix 38	AE2	B	318	335	Right-handed alpha
Helix 39	AE3	B	336	348	Right-handed alpha
Helix 40	AE4	B	350	358	Right-handed alpha
Helix 41	AE5	B	359	384	Right-handed alpha
Helix 42	AE6	B	387	396	Right-handed alpha
Helix 43	AE7	B	403	414	Right-handed alpha
Helix 44	AE8	B	419	446	Right-handed alpha
Helix 45	AE9	C	67	74	Right-handed alpha
Helix 46	AF1	C	91	98	Right-handed alpha
Helix 47	AF2	C	115	122	Right-handed alpha
Helix 48	AF3	C	188	193	Right-handed 310
Helix 49	AF4	C	233	245	Right-handed alpha
Helix 50	AF5	C	265	274	Right-handed 310
Helix 51	AF6	C	314	319	Right-handed 310
Helix 52	AF7	C	401	405	Right-handed 310
Helix 53	AF8	C	449	453	Right-handed 310
Helix 54	AF9	C	522	526	Right-handed 310
Helix 55	AG1	C	543	547	Right-handed 310
Helix 56	AG2	C	653	664	Right-handed alpha
Helix 57	AG3	D	53	56	Right-handed 310
Helix 58	AG4	D	62	65	Right-handed 310
Helix 59	AG5	D	74	77	Right-handed 310
Helix 60	AG6	E	336	339	Right-handed 310
Helix 61	AG7	E	428	431	Right-handed 310

There are 21 sheets in PDB entry 9LSJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	22	23	first strand
Strand 2	A	26	27	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	293	first strand
Strand 2	A	296	297	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	22	23	first strand
Strand 2	B	26	27	anti-parallel

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There are 24 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	55	59	parallel
Strand 3	C	79	82	parallel
Strand 4	C	103	107	parallel
Strand 5	C	127	131	parallel
Strand 6	C	151	153	parallel
Strand 7	C	175	177	parallel
Strand 8	C	201	203	parallel
Strand 9	C	225	229	parallel
Strand 10	C	252	256	parallel
Strand 11	C	278	280	parallel
Strand 12	C	302	304	parallel
Strand 13	C	326	328	parallel
Strand 14	C	359	361	parallel
Strand 15	C	383	385	parallel
Strand 16	C	411	413	parallel
Strand 17	C	435	437	parallel
Strand 18	C	460	462	parallel
Strand 19	C	484	486	parallel
Strand 20	C	510	512	parallel
Strand 21	C	534	536	parallel
Strand 22	C	566	568	parallel
Strand 23	C	590	592	parallel
Strand 24	C	614	616	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	186	first strand
Strand 2	C	211	212	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	263	first strand
Strand 2	C	288	289	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	313	first strand
Strand 2	C	345	346	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	395	396	first strand
Strand 2	C	421	422	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	444	446	first strand
Strand 2	C	468	470	parallel
Strand 3	C	492	493	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	676	677	first strand
Strand 2	C	686	687	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	23	25	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	113	117	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	106	109	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	78	83	anti-parallel
Strand 3	D	68	73	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	130	first strand
Strand 2	D	143	149	anti-parallel
Strand 3	D	194	199	anti-parallel
Strand 4	D	186	191	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	157	162	first strand
Strand 2	D	209	214	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	276	279	first strand
Strand 2	E	291	298	anti-parallel
Strand 3	E	351	356	anti-parallel
Strand 4	E	341	346	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	285	first strand
Strand 2	E	388	392	parallel
Strand 3	E	365	372	anti-parallel
Strand 4	E	306	312	anti-parallel
Strand 5	E	318	324	anti-parallel
Strand 6	E	331	333	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	283	285	first strand
Strand 2	E	388	392	parallel
Strand 3	E	365	372	anti-parallel
Strand 4	E	381	384	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	409	411	first strand
Strand 2	E	502	505	parallel
Strand 3	E	485	490	anti-parallel
Strand 4	E	433	438	anti-parallel
Strand 5	E	445	448	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	420	423	first strand
Strand 2	E	470	475	anti-parallel
Strand 3	E	462	465	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LSJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LSJ