Analysis of interatomic Contacts of Structural Units in PDB entry:
9LSK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LSK entry

There are 2 chains in PDB entry 9LSK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 18ILE 446
B
 LEU 18ILE 446
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 41 helices in PDB entry 9LSK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 45Right-handed alpha
Helix 2
AA2
A
50 72Right-handed alpha
Helix 3
AA3
A
72 78Right-handed alpha
Helix 4
AA4
A
81 96Right-handed alpha
Helix 5
AA5
A
100 112Right-handed alpha
Helix 6
AA6
A
115 132Right-handed alpha
Helix 7
AA7
A
133 167Right-handed alpha
Helix 8
AA8
A
169 177Right-handed alpha
Helix 9
AA9
A
177 183Right-handed alpha
Helix 10
AB1
A
190 201Right-handed alpha
Helix 11
AB2
A
204 237Right-handed alpha
Helix 12
AB3
A
264 288Right-handed alpha
Helix 13
AB4
A
299 315Right-handed alpha
Helix 14
AB5
A
318 336Right-handed alpha
Helix 15
AB6
A
336 348Right-handed alpha
Helix 16
AB7
A
350 357Right-handed alpha
Helix 17
AB8
A
359 385Right-handed alpha
Helix 18
AB9
A
387 395Right-handed alpha
Helix 19
AC1
A
406 414Right-handed alpha
Helix 20
AC2
A
419 446Right-handed alpha
Helix 21
AC3
B
28 45Right-handed alpha
Helix 22
AC4
B
50 72Right-handed alpha
Helix 23
AC5
B
72 78Right-handed alpha
Helix 24
AC6
B
81 96Right-handed alpha
Helix 25
AC7
B
100 112Right-handed alpha
Helix 26
AC8
B
115 131Right-handed alpha
Helix 27
AC9
B
133 167Right-handed alpha
Helix 28
AD1
B
169 177Right-handed alpha
Helix 29
AD2
B
177 183Right-handed alpha
Helix 30
AD3
B
190 202Right-handed alpha
Helix 31
AD4
B
204 237Right-handed alpha
Helix 32
AD5
B
237 242Right-handed alpha
Helix 33
AD6
B
264 288Right-handed alpha
Helix 34
AD7
B
299 315Right-handed alpha
Helix 35
AD8
B
318 336Right-handed alpha
Helix 36
AD9
B
336 348Right-handed alpha
Helix 37
AE1
B
350 358Right-handed alpha
Helix 38
AE2
B
359 385Right-handed alpha
Helix 39
AE3
B
387 395Right-handed alpha
Helix 40
AE4
B
405 414Right-handed alpha
Helix 41
AE5
B
419 446Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9LSK. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
26 27anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
26 27anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il