Analysis of interatomic Contacts of Structural Units in PDB entry:
9LSW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LSW entry

There are 20 chains in PDB entry 9LSW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 7	PHE 65
A	SER 69	SER 228
B	VAL 7	PHE 65
B	SER 69	SER 228
C	VAL 7	PHE 65
C	SER 69	SER 228
D	VAL 7	PHE 65
D	SER 69	SER 228
E	VAL 7	PHE 65
E	SER 69	SER 228
F	VAL 7	PHE 65
F	SER 69	SER 228
G	VAL 7	PHE 65
G	SER 69	SER 228
H	VAL 7	PHE 65
H	SER 69	SER 228
I	VAL 7	PHE 65
I	SER 69	SER 228
J	VAL 7	PHE 65
J	SER 69	SER 228

There are 24 helices in PDB entry 9LSW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	65	Right-handed 310
Helix 2	AA2	A	69	73	Right-handed 310
Helix 3	AA3	A	81	86	Right-handed alpha
Helix 4	AA4	B	57	65	Right-handed 310
Helix 5	AA5	B	81	86	Right-handed alpha
Helix 6	AA6	C	57	65	Right-handed 310
Helix 7	AA7	C	81	86	Right-handed alpha
Helix 8	AA8	D	57	65	Right-handed 310
Helix 9	AA9	D	69	73	Right-handed 310
Helix 10	AB1	D	81	86	Right-handed alpha
Helix 11	AB2	E	57	65	Right-handed 310
Helix 12	AB3	E	69	73	Right-handed 310
Helix 13	AB4	E	81	86	Right-handed alpha
Helix 14	AB5	F	57	65	Right-handed 310
Helix 15	AB6	F	81	86	Right-handed alpha
Helix 16	AB7	G	57	65	Right-handed 310
Helix 17	AB8	G	69	73	Right-handed 310
Helix 18	AB9	H	57	65	Right-handed 310
Helix 19	AC1	H	69	73	Right-handed 310
Helix 20	AC2	H	81	86	Right-handed alpha
Helix 21	AC3	I	57	65	Right-handed 310
Helix 22	AC4	I	81	87	Right-handed alpha
Helix 23	AC5	J	57	65	Right-handed 310
Helix 24	AC6	J	81	86	Right-handed alpha

There are 10 sheets in PDB entry 9LSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	143	first strand
Strand 2	A	163	173	anti-parallel
Strand 3	A	178	189	anti-parallel
Strand 4	A	91	99	anti-parallel
Strand 5	A	104	114	anti-parallel
Strand 6	A	117	127	anti-parallel
Strand 7	A	12	22	parallel
Strand 8	A	25	35	anti-parallel
Strand 9	A	41	50	anti-parallel
Strand 10	A	216	226	anti-parallel
Strand 11	A	199	210	anti-parallel
Strand 12	A	146	151	anti-parallel
Strand 13	A	163	173	anti-parallel

Back to list of sheets
Back to top of page

There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	143	first strand
Strand 2	B	163	173	anti-parallel
Strand 3	B	178	189	anti-parallel
Strand 4	B	91	99	anti-parallel
Strand 5	B	104	114	anti-parallel
Strand 6	B	117	127	anti-parallel
Strand 7	B	12	22	parallel
Strand 8	B	25	35	anti-parallel
Strand 9	B	41	50	anti-parallel
Strand 10	B	216	226	anti-parallel
Strand 11	B	199	210	anti-parallel
Strand 12	B	146	151	anti-parallel
Strand 13	B	163	173	anti-parallel

Back to list of sheets
Back to top of page

There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	143	first strand
Strand 2	C	163	173	anti-parallel
Strand 3	C	178	189	anti-parallel
Strand 4	C	91	99	anti-parallel
Strand 5	C	104	114	anti-parallel
Strand 6	C	117	127	anti-parallel
Strand 7	C	12	22	parallel
Strand 8	C	25	35	anti-parallel
Strand 9	C	41	50	anti-parallel
Strand 10	C	216	226	anti-parallel
Strand 11	C	199	210	anti-parallel
Strand 12	C	146	152	anti-parallel
Strand 13	C	163	173	anti-parallel

Back to list of sheets
Back to top of page

There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	143	first strand
Strand 2	D	163	173	anti-parallel
Strand 3	D	178	189	anti-parallel
Strand 4	D	91	99	anti-parallel
Strand 5	D	104	114	anti-parallel
Strand 6	D	117	127	anti-parallel
Strand 7	D	12	22	parallel
Strand 8	D	25	35	anti-parallel
Strand 9	D	42	50	anti-parallel
Strand 10	D	216	226	anti-parallel
Strand 11	D	199	210	anti-parallel
Strand 12	D	146	151	anti-parallel
Strand 13	D	163	173	anti-parallel

Back to list of sheets
Back to top of page

There are 13 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	143	first strand
Strand 2	E	163	173	anti-parallel
Strand 3	E	178	189	anti-parallel
Strand 4	E	90	99	anti-parallel
Strand 5	E	104	114	anti-parallel
Strand 6	E	117	127	anti-parallel
Strand 7	E	12	22	parallel
Strand 8	E	25	36	anti-parallel
Strand 9	E	41	50	anti-parallel
Strand 10	E	216	226	anti-parallel
Strand 11	E	199	210	anti-parallel
Strand 12	E	146	151	anti-parallel
Strand 13	E	163	173	anti-parallel

Back to list of sheets
Back to top of page

There are 13 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	143	first strand
Strand 2	F	163	173	anti-parallel
Strand 3	F	178	189	anti-parallel
Strand 4	F	91	99	anti-parallel
Strand 5	F	104	114	anti-parallel
Strand 6	F	117	127	anti-parallel
Strand 7	F	12	22	parallel
Strand 8	F	25	35	anti-parallel
Strand 9	F	41	50	anti-parallel
Strand 10	F	216	226	anti-parallel
Strand 11	F	199	210	anti-parallel
Strand 12	F	146	151	anti-parallel
Strand 13	F	163	173	anti-parallel

Back to list of sheets
Back to top of page

There are 13 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	140	143	first strand
Strand 2	G	163	173	anti-parallel
Strand 3	G	178	189	anti-parallel
Strand 4	G	91	99	anti-parallel
Strand 5	G	104	114	anti-parallel
Strand 6	G	117	127	anti-parallel
Strand 7	G	12	22	parallel
Strand 8	G	25	35	anti-parallel
Strand 9	G	41	50	anti-parallel
Strand 10	G	216	226	anti-parallel
Strand 11	G	199	210	anti-parallel
Strand 12	G	146	152	anti-parallel
Strand 13	G	163	173	anti-parallel

Back to list of sheets
Back to top of page

There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	143	first strand
Strand 2	H	163	173	anti-parallel
Strand 3	H	178	189	anti-parallel
Strand 4	H	91	99	anti-parallel
Strand 5	H	104	114	anti-parallel
Strand 6	H	117	127	anti-parallel
Strand 7	H	12	22	parallel
Strand 8	H	25	35	anti-parallel
Strand 9	H	41	50	anti-parallel
Strand 10	H	216	226	anti-parallel
Strand 11	H	199	210	anti-parallel
Strand 12	H	146	152	anti-parallel
Strand 13	H	163	173	anti-parallel

Back to list of sheets
Back to top of page

There are 13 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	140	143	first strand
Strand 2	I	163	173	anti-parallel
Strand 3	I	178	189	anti-parallel
Strand 4	I	90	99	anti-parallel
Strand 5	I	104	114	anti-parallel
Strand 6	I	117	127	anti-parallel
Strand 7	I	12	22	parallel
Strand 8	I	25	35	anti-parallel
Strand 9	I	42	50	anti-parallel
Strand 10	I	216	226	anti-parallel
Strand 11	I	199	210	anti-parallel
Strand 12	I	146	151	anti-parallel
Strand 13	I	163	173	anti-parallel

Back to list of sheets
Back to top of page

There are 13 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	140	143	first strand
Strand 2	J	163	173	anti-parallel
Strand 3	J	178	189	anti-parallel
Strand 4	J	91	99	anti-parallel
Strand 5	J	104	113	anti-parallel
Strand 6	J	117	127	anti-parallel
Strand 7	J	12	22	parallel
Strand 8	J	25	35	anti-parallel
Strand 9	J	41	50	anti-parallel
Strand 10	J	216	226	anti-parallel
Strand 11	J	199	210	anti-parallel
Strand 12	J	146	151	anti-parallel
Strand 13	J	163	173	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LSW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LSW