Analysis of interatomic Contacts of Structural Units in PDB entry:
9LSZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LSZ entry

There are 3 chains in PDB entry 9LSZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 15HIS 609
L
 ASP 10GLU 119
H
 VAL 10VAL 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9LSZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 26Right-handed alpha
Helix 2
AA2
A
40 48Right-handed alpha
Helix 3
AA3
A
51 56Right-handed alpha
Helix 4
AA4
A
56 64Right-handed alpha
Helix 5
AA5
A
67 81Right-handed alpha
Helix 6
AA6
A
81 97Right-handed alpha
Helix 7
AA7
A
99 108Right-handed alpha
Helix 8
AA8
A
109 111Right-handed 310
Helix 9
AA9
A
112 142Right-handed alpha
Helix 10
AB1
A
163 169Right-handed alpha
Helix 11
AB2
A
170 178Right-handed alpha
Helix 12
AB3
A
194 212Right-handed alpha
Helix 13
AB4
A
215 227Right-handed alpha
Helix 14
AB5
A
228 243Right-handed alpha
Helix 15
AB6
A
246 256Right-handed alpha
Helix 16
AB7
A
258 263Right-handed alpha
Helix 17
AB8
A
264 280Right-handed alpha
Helix 18
AB9
A
284 291Right-handed alpha
Helix 19
AC1
A
298 348Right-handed alpha
Helix 20
AC2
A
359 371Right-handed alpha
Helix 21
AC3
A
371 377Right-handed alpha
Helix 22
AC4
A
384 391Right-handed alpha
Helix 23
AC5
A
397 409Right-handed alpha
Helix 24
AC6
A
412 447Right-handed alpha
Helix 25
AC7
A
454 475Right-handed alpha
Helix 26
AC8
A
477 490Right-handed alpha
Helix 27
AC9
A
491 508Right-handed alpha
Helix 28
AD1
A
510 523Right-handed alpha
Helix 29
AD2
A
527 536Right-handed alpha
Helix 30
AD3
A
536 554Right-handed alpha
Helix 31
AD4
A
581 590Right-handed alpha
Helix 32
AD5
A
591 608Right-handed alpha
Helix 33
AD6
L
94 98Right-handed 310
Helix 34
AD7
H
36 40Right-handed 310
Helix 35
AD8
H
70 73Right-handed 310
Helix 36
AD9
H
82 85Right-handed 310
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There are 6 sheets in PDB entry 9LSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
559 562first strand
Strand 2
A
574 577anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
13 14first strand
Strand 2
L
28 34anti-parallel
Strand 3
L
85 90anti-parallel
Strand 4
L
77 81anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
19 21first strand
Strand 2
L
116 119parallel
Strand 3
L
100 105anti-parallel
Strand 4
L
48 53anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
39 40first strand
Strand 2
L
45 46anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
18 19first strand
Strand 2
H
125 128parallel
Strand 3
H
100 107anti-parallel
Strand 4
H
41 47anti-parallel
Strand 5
H
53 59anti-parallel
Strand 6
H
66 68anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
26 29first strand
Strand 2
H
86 91anti-parallel
Strand 3
H
76 81anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il