Analysis of interatomic Contacts of Structural Units in PDB entry:
9LTP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LTP entry

There are 4 chains in PDB entry 9LTP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 361
B
 PRO 11GLY 186
C
 MET 1LYS 361
D
 TYR 15PRO 187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 62 helices in PDB entry 9LTP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 25Right-handed alpha
Helix 2
AA2
A
63 83Right-handed alpha
Helix 3
AA3
A
83 88Right-handed alpha
Helix 4
AA4
A
90 99Right-handed alpha
Helix 5
AA5
A
102 104Right-handed 310
Helix 6
AA6
A
105 114Right-handed alpha
Helix 7
AA7
A
115 123Right-handed alpha
Helix 8
AA8
A
125 135Right-handed alpha
Helix 9
AA9
A
140 149Right-handed alpha
Helix 10
AB1
A
155 160Right-handed alpha
Helix 11
AB2
A
163 180Right-handed alpha
Helix 12
AB3
A
188 198Right-handed alpha
Helix 13
AB4
A
201 215Right-handed alpha
Helix 14
AB5
A
220 225Right-handed alpha
Helix 15
AB6
A
228 246Right-handed alpha
Helix 16
AB7
A
246 256Right-handed alpha
Helix 17
AB8
A
259 264Right-handed alpha
Helix 18
AB9
A
264 269Right-handed alpha
Helix 19
AC1
A
277 292Right-handed alpha
Helix 20
AC2
A
293 307Right-handed alpha
Helix 21
AC3
A
307 312Right-handed alpha
Helix 22
AC4
A
315 325Right-handed alpha
Helix 23
AC5
A
325 330Right-handed alpha
Helix 24
AC6
A
334 352Right-handed alpha
Helix 25
AC7
B
30 41Right-handed alpha
Helix 26
AC8
B
80 89Right-handed alpha
Helix 27
AC9
B
102 108Right-handed alpha
Helix 28
AD1
B
108 121Right-handed alpha
Helix 29
AD2
B
135 139Right-handed 310
Helix 30
AD3
B
142 153Right-handed alpha
Helix 31
AD4
B
168 184Right-handed alpha
Helix 32
AD5
C
7 25Right-handed alpha
Helix 33
AD6
C
64 83Right-handed alpha
Helix 34
AD7
C
83 88Right-handed alpha
Helix 35
AD8
C
90 100Right-handed alpha
Helix 36
AD9
C
102 104Right-handed 310
Helix 37
AE1
C
105 114Right-handed alpha
Helix 38
AE2
C
115 123Right-handed alpha
Helix 39
AE3
C
127 138Right-handed alpha
Helix 40
AE4
C
140 149Right-handed alpha
Helix 41
AE5
C
155 160Right-handed alpha
Helix 42
AE6
C
163 180Right-handed alpha
Helix 43
AE7
C
188 197Right-handed alpha
Helix 44
AE8
C
201 215Right-handed alpha
Helix 45
AE9
C
220 225Right-handed alpha
Helix 46
AF1
C
228 246Right-handed alpha
Helix 47
AF2
C
246 256Right-handed alpha
Helix 48
AF3
C
259 264Right-handed alpha
Helix 49
AF4
C
264 269Right-handed alpha
Helix 50
AF5
C
277 291Right-handed alpha
Helix 51
AF6
C
293 307Right-handed alpha
Helix 52
AF7
C
307 312Right-handed alpha
Helix 53
AF8
C
315 325Right-handed alpha
Helix 54
AF9
C
325 330Right-handed alpha
Helix 55
AG1
C
334 352Right-handed alpha
Helix 56
AG2
D
30 41Right-handed alpha
Helix 57
AG3
D
77 79Right-handed 310
Helix 58
AG4
D
80 89Right-handed alpha
Helix 59
AG5
D
102 107Right-handed alpha
Helix 60
AG6
D
108 121Right-handed alpha
Helix 61
AG7
D
142 153Right-handed alpha
Helix 62
AG8
D
168 184Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9LTP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
51 52anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 62first strand
Strand 2
B
65 73anti-parallel
Strand 3
B
17 25parallel
Strand 4
B
93 99parallel
Strand 5
B
125 131parallel
Strand 6
B
158 160parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 62first strand
Strand 2
D
65 74anti-parallel
Strand 3
D
17 25parallel
Strand 4
D
93 99parallel
Strand 5
D
125 131parallel
Strand 6
D
158 160parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il