Analysis of interatomic Contacts of Structural Units in PDB entry:
9LTT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LTT entry

There are 3 chains in PDB entry 9LTT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 26ARG 866
B
 ARG 26ARG 866
C
 G 1 A 73
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 76 helices in PDB entry 9LTT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 49Right-handed alpha
Helix 2
AA2
A
53 64Right-handed alpha
Helix 3
AA3
A
65 94Right-handed alpha
Helix 4
AA4
A
99 117Right-handed alpha
Helix 5
AA5
A
123 135Right-handed alpha
Helix 6
AA6
A
138 168Right-handed alpha
Helix 7
AA7
A
168 177Right-handed alpha
Helix 8
AA8
A
179 201Right-handed alpha
Helix 9
AA9
A
218 244Right-handed alpha
Helix 10
AB1
A
250 269Right-handed alpha
Helix 11
AB2
A
270 274Right-handed 310
Helix 12
AB3
A
275 286Right-handed alpha
Helix 13
AB4
A
290 306Right-handed alpha
Helix 14
AB5
A
306 322Right-handed alpha
Helix 15
AB6
A
329 361Right-handed alpha
Helix 16
AB7
A
366 377Right-handed alpha
Helix 17
AB8
A
378 405Right-handed alpha
Helix 18
AB9
A
407 430Right-handed alpha
Helix 19
AC1
A
431 448Right-handed alpha
Helix 20
AC2
A
449 452Right-handed 310
Helix 21
AC3
A
464 486Right-handed alpha
Helix 22
AC4
A
492 498Right-handed 310
Helix 23
AC5
A
503 528Right-handed alpha
Helix 24
AC6
A
539 552Right-handed alpha
Helix 25
AC7
A
555 564Right-handed 310
Helix 26
AC8
A
599 614Right-handed alpha
Helix 27
AC9
A
624 626Right-handed 310
Helix 28
AD1
A
627 634Right-handed alpha
Helix 29
AD2
A
650 652Right-handed 310
Helix 30
AD3
A
656 658Right-handed 310
Helix 31
AD4
A
659 672Right-handed alpha
Helix 32
AD5
A
680 686Right-handed 310
Helix 33
AD6
A
687 702Right-handed alpha
Helix 34
AD7
A
715 720Right-handed alpha
Helix 35
AD8
A
762 778Right-handed alpha
Helix 36
AD9
A
805 818Right-handed alpha
Helix 37
AE1
A
822 828Right-handed alpha
Helix 38
AE2
A
845 859Right-handed alpha
Helix 39
AE3
B
27 49Right-handed alpha
Helix 40
AE4
B
53 64Right-handed alpha
Helix 41
AE5
B
65 94Right-handed alpha
Helix 42
AE6
B
99 117Right-handed alpha
Helix 43
AE7
B
123 135Right-handed alpha
Helix 44
AE8
B
138 168Right-handed alpha
Helix 45
AE9
B
168 177Right-handed alpha
Helix 46
AF1
B
179 201Right-handed alpha
Helix 47
AF2
B
218 244Right-handed alpha
Helix 48
AF3
B
250 269Right-handed alpha
Helix 49
AF4
B
270 274Right-handed 310
Helix 50
AF5
B
275 286Right-handed alpha
Helix 51
AF6
B
290 306Right-handed alpha
Helix 52
AF7
B
306 322Right-handed alpha
Helix 53
AF8
B
329 361Right-handed alpha
Helix 54
AF9
B
366 377Right-handed alpha
Helix 55
AG1
B
378 405Right-handed alpha
Helix 56
AG2
B
407 430Right-handed alpha
Helix 57
AG3
B
431 448Right-handed alpha
Helix 58
AG4
B
449 452Right-handed 310
Helix 59
AG5
B
464 486Right-handed alpha
Helix 60
AG6
B
492 498Right-handed 310
Helix 61
AG7
B
503 528Right-handed alpha
Helix 62
AG8
B
539 552Right-handed alpha
Helix 63
AG9
B
555 564Right-handed 310
Helix 64
AH1
B
599 614Right-handed alpha
Helix 65
AH2
B
624 626Right-handed 310
Helix 66
AH3
B
627 634Right-handed alpha
Helix 67
AH4
B
650 652Right-handed 310
Helix 68
AH5
B
656 658Right-handed 310
Helix 69
AH6
B
659 672Right-handed alpha
Helix 70
AH7
B
680 686Right-handed 310
Helix 71
AH8
B
687 702Right-handed alpha
Helix 72
AH9
B
715 720Right-handed alpha
Helix 73
AI1
B
762 778Right-handed alpha
Helix 74
AI2
B
805 818Right-handed alpha
Helix 75
AI3
B
822 828Right-handed alpha
Helix 76
AI4
B
845 859Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 9LTT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 209first strand
Strand 2
A
212 215anti-parallel
Strand 3
A
802 803anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
567 570first strand
Strand 2
A
576 583anti-parallel
Strand 3
A
586 595anti-parallel
Strand 4
A
617 623parallel
Strand 5
A
832 840anti-parallel
Strand 6
A
637 648anti-parallel
Strand 7
A
782 788anti-parallel
Strand 8
A
747 755parallel
Strand 9
A
732 741anti-parallel
Strand 10
A
724 729anti-parallel
Strand 11
A
674 679anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 209first strand
Strand 2
B
212 215anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
567 570first strand
Strand 2
B
576 583anti-parallel
Strand 3
B
586 595anti-parallel
Strand 4
B
617 623parallel
Strand 5
B
832 840anti-parallel
Strand 6
B
637 648anti-parallel
Strand 7
B
782 788anti-parallel
Strand 8
B
747 755parallel
Strand 9
B
732 741anti-parallel
Strand 10
B
724 729anti-parallel
Strand 11
B
674 679anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il