Analysis of interatomic Contacts of Structural Units in PDB entry:
9LU1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LU1 entry

There are 6 chains in PDB entry 9LU1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 257	LEU 730
B	ALA 2	ASN 67
C	LYS 52	THR 201
E	LEU 261	LEU 728
R	THR 7	THR 550
S	MET 1	HIS 1140

There are 37 helices in PDB entry 9LU1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	257	301	Right-handed alpha
Helix 2	AA2	A	353	363	Right-handed alpha
Helix 3	AA3	A	363	373	Right-handed alpha
Helix 4	AA4	A	389	400	Right-handed alpha
Helix 5	AA5	A	450	456	Right-handed alpha
Helix 6	AA6	B	54	58	Right-handed 310
Helix 7	AA7	B	60	66	Right-handed alpha
Helix 8	AA8	C	54	70	Right-handed alpha
Helix 9	AA9	C	152	166	Right-handed alpha
Helix 10	AB1	C	174	184	Right-handed alpha
Helix 11	AB2	C	185	197	Right-handed alpha
Helix 12	AB3	E	262	301	Right-handed alpha
Helix 13	AB4	E	357	371	Right-handed alpha
Helix 14	AB5	E	390	402	Right-handed alpha
Helix 15	AB6	E	449	455	Right-handed alpha
Helix 16	AB7	R	17	28	Right-handed alpha
Helix 17	AB8	R	34	41	Right-handed alpha
Helix 18	AB9	R	42	46	Right-handed 310
Helix 19	AC1	R	110	124	Right-handed alpha
Helix 20	AC2	R	169	174	Right-handed alpha
Helix 21	AC3	R	216	220	Right-handed 310
Helix 22	AC4	R	264	269	Right-handed 310
Helix 23	AC5	R	293	309	Right-handed alpha
Helix 24	AC6	R	315	321	Right-handed alpha
Helix 25	AC7	R	348	353	Right-handed alpha
Helix 26	AC8	R	384	393	Right-handed alpha
Helix 27	AC9	R	393	399	Right-handed alpha
Helix 28	AD1	R	417	431	Right-handed alpha
Helix 29	AD2	R	436	446	Right-handed alpha
Helix 30	AD3	S	381	384	Right-handed 310
Helix 31	AD4	S	986	990	Right-handed 310
Helix 32	AD5	S	1044	1060	Right-handed alpha
Helix 33	AD6	S	1069	1074	Right-handed alpha
Helix 34	AD7	S	1091	1096	Right-handed alpha
Helix 35	AD8	S	1097	1100	Right-handed 310
Helix 36	AD9	S	1101	1109	Right-handed alpha
Helix 37	AE1	S	1125	1137	Right-handed alpha

There are 46 sheets in PDB entry 9LU1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	412	first strand
Strand 2	A	724	729	anti-parallel
Strand 3	A	716	720	anti-parallel
Strand 4	A	700	705	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	428	first strand
Strand 2	A	435	440	anti-parallel
Strand 3	A	444	449	anti-parallel
Strand 4	A	465	468	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	478	first strand
Strand 2	A	486	490	anti-parallel
Strand 3	A	495	498	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	541	first strand
Strand 2	A	548	553	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	563	first strand
Strand 2	A	571	573	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	583	first strand
Strand 2	A	591	595	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	602	607	first strand
Strand 2	A	612	617	anti-parallel
Strand 3	A	622	626	anti-parallel
Strand 4	A	632	636	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	650	first strand
Strand 2	A	654	657	anti-parallel
Strand 3	A	665	668	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	49	first strand
Strand 2	S	152	158	parallel
Strand 3	S	139	144	anti-parallel
Strand 4	S	130	134	anti-parallel
Strand 5	S	121	124	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	92	first strand
Strand 2	C	103	109	anti-parallel
Strand 3	C	120	123	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	409	412	first strand
Strand 2	E	724	727	anti-parallel
Strand 3	E	717	720	anti-parallel
Strand 4	E	700	703	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	424	428	first strand
Strand 2	E	437	440	anti-parallel
Strand 3	E	445	447	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	476	478	first strand
Strand 2	E	486	488	anti-parallel
Strand 3	E	494	498	anti-parallel
Strand 4	E	505	510	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	516	521	first strand
Strand 2	E	528	533	anti-parallel
Strand 3	E	537	542	anti-parallel
Strand 4	E	550	553	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	558	563	first strand
Strand 2	E	570	575	anti-parallel
Strand 3	E	579	584	anti-parallel
Strand 4	E	593	596	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	602	609	first strand
Strand 2	E	612	617	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	654	659	first strand
Strand 2	E	663	668	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	50	53	first strand
Strand 2	R	539	545	anti-parallel
Strand 3	R	528	534	anti-parallel
Strand 4	R	517	522	anti-parallel
Strand 5	R	480	481	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	61	65	first strand
Strand 2	R	71	75	anti-parallel
Strand 3	R	81	87	anti-parallel
Strand 4	R	125	132	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	139	140	first strand
Strand 2	R	153	161	anti-parallel
Strand 3	R	189	197	anti-parallel
Strand 4	R	203	212	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	222	225	first strand
Strand 2	R	228	233	anti-parallel
Strand 3	R	238	244	anti-parallel
Strand 4	R	250	256	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	330	338	first strand
Strand 2	R	341	347	anti-parallel
Strand 3	R	364	369	anti-parallel
Strand 4	R	374	380	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	466	467	first strand
Strand 2	R	487	491	anti-parallel
Strand 3	R	497	501	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	4	10	first strand
Strand 2	S	1037	1042	anti-parallel
Strand 3	S	1025	1032	anti-parallel
Strand 4	S	1004	1009	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	17	21	first strand
Strand 2	S	30	35	anti-parallel
Strand 3	S	38	44	anti-parallel
Strand 4	S	49	56	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	63	65	first strand
Strand 2	S	77	80	anti-parallel
Strand 3	S	85	94	anti-parallel
Strand 4	S	97	107	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	164	169	first strand
Strand 2	S	177	182	anti-parallel
Strand 3	S	189	196	anti-parallel
Strand 4	S	201	208	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	216	222	first strand
Strand 2	S	228	233	anti-parallel
Strand 3	S	237	241	anti-parallel
Strand 4	S	244	248	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	258	263	first strand
Strand 2	S	270	275	anti-parallel
Strand 3	S	279	286	anti-parallel
Strand 4	S	299	307	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	315	316	first strand
Strand 2	S	321	324	anti-parallel
Strand 3	S	331	336	anti-parallel
Strand 4	S	347	353	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	359	364	first strand
Strand 2	S	375	379	anti-parallel
Strand 3	S	386	393	anti-parallel
Strand 4	S	709	716	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	396	402	first strand
Strand 2	S	699	704	anti-parallel
Strand 3	S	691	695	anti-parallel
Strand 4	S	676	680	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	411	413	first strand
Strand 2	S	424	426	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	435	437	first strand
Strand 2	S	444	446	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	457	460	first strand
Strand 2	S	470	472	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	467	468	first strand
Strand 2	S	479	480	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	498	500	first strand
Strand 2	S	507	512	anti-parallel
Strand 3	S	515	522	anti-parallel
Strand 4	S	525	533	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	538	542	first strand
Strand 2	S	557	560	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	568	569	first strand
Strand 2	S	576	578	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	590	595	first strand
Strand 2	S	600	605	anti-parallel
Strand 3	S	610	615	anti-parallel
Strand 4	S	627	630	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	637	642	first strand
Strand 2	S	647	652	anti-parallel
Strand 3	S	657	662	anti-parallel
Strand 4	S	665	670	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	720	727	first strand
Strand 2	S	732	742	anti-parallel
Strand 3	S	785	794	anti-parallel
Strand 4	S	801	806	anti-parallel
Strand 5	S	764	765	parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	812	817	first strand
Strand 2	S	829	834	anti-parallel
Strand 3	S	846	854	anti-parallel
Strand 4	S	857	866	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	870	876	first strand
Strand 2	S	879	884	anti-parallel
Strand 3	S	888	893	anti-parallel
Strand 4	S	899	905	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	913	917	first strand
Strand 2	S	920	924	anti-parallel
Strand 3	S	930	935	anti-parallel
Strand 4	S	942	947	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	954	959	first strand
Strand 2	S	965	969	anti-parallel
Strand 3	S	973	979	anti-parallel
Strand 4	S	992	999	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LU1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LU1