Analysis of interatomic Contacts of Structural Units in PDB entry:
9LU2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LU2 entry

There are 2 chains in PDB entry 9LU2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 4	SER 512
B	HIS 4	VAL 514

There are 39 helices in PDB entry 9LU2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	29	Right-handed alpha
Helix 2	AA2	A	58	68	Right-handed alpha
Helix 3	AA3	A	70	78	Right-handed alpha
Helix 4	AA4	A	116	123	Right-handed alpha
Helix 5	AA5	A	133	140	Right-handed alpha
Helix 6	AA6	A	163	179	Right-handed alpha
Helix 7	AA7	A	237	242	Right-handed alpha
Helix 8	AA8	A	295	308	Right-handed alpha
Helix 9	AA9	A	338	340	Right-handed 310
Helix 10	AB1	A	349	365	Right-handed alpha
Helix 11	AB2	A	369	371	Right-handed 310
Helix 12	AB3	A	372	401	Right-handed alpha
Helix 13	AB4	A	406	414	Right-handed alpha
Helix 14	AB5	A	415	419	Right-handed 310
Helix 15	AB6	A	420	431	Right-handed alpha
Helix 16	AB7	A	436	440	Right-handed 310
Helix 17	AB8	A	448	459	Right-handed alpha
Helix 18	AB9	A	483	496	Right-handed alpha
Helix 19	AC1	A	498	507	Right-handed alpha
Helix 20	AC2	B	14	29	Right-handed alpha
Helix 21	AC3	B	58	68	Right-handed alpha
Helix 22	AC4	B	70	77	Right-handed alpha
Helix 23	AC5	B	115	120	Right-handed alpha
Helix 24	AC6	B	126	131	Right-handed alpha
Helix 25	AC7	B	133	140	Right-handed alpha
Helix 26	AC8	B	163	179	Right-handed alpha
Helix 27	AC9	B	237	242	Right-handed alpha
Helix 28	AD1	B	295	308	Right-handed alpha
Helix 29	AD2	B	338	340	Right-handed 310
Helix 30	AD3	B	349	365	Right-handed alpha
Helix 31	AD4	B	369	371	Right-handed 310
Helix 32	AD5	B	372	401	Right-handed alpha
Helix 33	AD6	B	407	413	Right-handed alpha
Helix 34	AD7	B	415	419	Right-handed 310
Helix 35	AD8	B	420	431	Right-handed alpha
Helix 36	AD9	B	436	440	Right-handed 310
Helix 37	AE1	B	448	459	Right-handed alpha
Helix 38	AE2	B	482	496	Right-handed alpha
Helix 39	AE3	B	498	509	Right-handed alpha

There are 11 sheets in PDB entry 9LU2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	185	first strand
Strand 2	A	38	43	parallel
Strand 3	A	8	11	parallel
Strand 4	A	214	217	parallel
Strand 5	A	334	336	parallel
Strand 6	A	330	331	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	159	162	anti-parallel
Strand 3	A	81	83	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	105	first strand
Strand 2	A	85	89	anti-parallel
Strand 3	A	264	269	parallel
Strand 4	A	272	278	anti-parallel
Strand 5	A	282	289	anti-parallel
Strand 6	A	245	252	anti-parallel
Strand 7	A	318	320	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	193	first strand
Strand 2	A	199	203	anti-parallel
Strand 3	A	210	211	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	236	first strand
Strand 2	A	324	326	anti-parallel
Strand 3	A	342	343	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	185	first strand
Strand 2	B	38	43	parallel
Strand 3	B	8	12	parallel
Strand 4	B	214	215	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	159	162	anti-parallel
Strand 3	B	81	83	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	105	first strand
Strand 2	B	85	89	anti-parallel
Strand 3	B	264	269	parallel
Strand 4	B	272	278	anti-parallel
Strand 5	B	282	289	anti-parallel
Strand 6	B	245	252	anti-parallel
Strand 7	B	317	320	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	193	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	209	211	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	236	first strand
Strand 2	B	324	326	anti-parallel
Strand 3	B	342	343	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	331	first strand
Strand 2	B	334	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LU2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LU2