Analysis of interatomic Contacts of Structural Units in PDB entry:
9LU8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LU8 entry

There is 1 chain in PDB entry 9LU8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 165THR 1885
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 80 helices in PDB entry 9LU8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
167 173Right-handed alpha
Helix 2
AA2
A
179 195Right-handed alpha
Helix 3
AA3
A
197 217Right-handed alpha
Helix 4
AA4
A
220 233Right-handed alpha
Helix 5
AA5
A
238 248Right-handed alpha
Helix 6
AA6
A
251 262Right-handed alpha
Helix 7
AA7
A
300 313Right-handed alpha
Helix 8
AA8
A
316 334Right-handed alpha
Helix 9
AA9
A
336 339Right-handed 310
Helix 10
AB1
A
340 357Right-handed alpha
Helix 11
AB2
A
358 363Right-handed alpha
Helix 12
AB3
A
370 376Right-handed alpha
Helix 13
AB4
A
376 388Right-handed alpha
Helix 14
AB5
A
408 414Right-handed alpha
Helix 15
AB6
A
415 418Right-handed 310
Helix 16
AB7
A
421 425Right-handed 310
Helix 17
AB8
A
441 445Right-handed 310
Helix 18
AB9
A
449 453Right-handed 310
Helix 19
AC1
A
462 471Right-handed alpha
Helix 20
AC2
A
471 489Right-handed alpha
Helix 21
AC3
A
490 494Right-handed 310
Helix 22
AC4
A
507 516Right-handed alpha
Helix 23
AC5
A
517 537Right-handed alpha
Helix 24
AC6
A
546 572Right-handed alpha
Helix 25
AC7
A
578 602Right-handed alpha
Helix 26
AC8
A
622 627Right-handed alpha
Helix 27
AC9
A
634 671Right-handed alpha
Helix 28
AD1
A
687 689Right-handed 310
Helix 29
AD2
A
690 707Right-handed alpha
Helix 30
AD3
A
709 730Right-handed alpha
Helix 31
AD4
A
737 753Right-handed alpha
Helix 32
AD5
A
764 783Right-handed alpha
Helix 33
AD6
A
787 795Right-handed alpha
Helix 34
AD7
A
812 817Right-handed alpha
Helix 35
AD8
A
818 820Right-handed 310
Helix 36
AD9
A
833 845Right-handed alpha
Helix 37
AE1
A
854 858Right-handed 310
Helix 38
AE2
A
875 880Right-handed alpha
Helix 39
AE3
A
890 899Right-handed alpha
Helix 40
AE4
A
899 911Right-handed alpha
Helix 41
AE5
A
956 966Right-handed alpha
Helix 42
AE6
A
968 976Right-handed alpha
Helix 43
AE7
A
977 991Right-handed alpha
Helix 44
AE8
A
991 999Right-handed alpha
Helix 45
AE9
A
1001 1016Right-handed alpha
Helix 46
AF1
A
1025 1029Right-handed 310
Helix 47
AF2
A
1030 1044Right-handed alpha
Helix 48
AF3
A
1100 1108Right-handed alpha
Helix 49
AF4
A
1109 1112Right-handed 310
Helix 50
AF5
A
1127 1132Right-handed alpha
Helix 51
AF6
A
1133 1138Right-handed alpha
Helix 52
AF7
A
1139 1142Right-handed 310
Helix 53
AF8
A
1189 1206Right-handed alpha
Helix 54
AF9
A
1220 1225Right-handed alpha
Helix 55
AG1
A
1239 1252Right-handed alpha
Helix 56
AG2
A
1270 1289Right-handed alpha
Helix 57
AG3
A
1291 1299Right-handed alpha
Helix 58
AG4
A
1302 1313Right-handed alpha
Helix 59
AG5
A
1313 1343Right-handed alpha
Helix 60
AG6
A
1367 1372Right-handed alpha
Helix 61
AG7
A
1372 1390Right-handed alpha
Helix 62
AG8
A
1390 1398Right-handed alpha
Helix 63
AG9
A
1401 1411Right-handed alpha
Helix 64
AH1
A
1456 1465Right-handed alpha
Helix 65
AH2
A
1468 1486Right-handed alpha
Helix 66
AH3
A
1488 1490Right-handed 310
Helix 67
AH4
A
1491 1504Right-handed alpha
Helix 68
AH5
A
1514 1531Right-handed alpha
Helix 69
AH6
A
1540 1553Right-handed alpha
Helix 70
AH7
A
1571 1582Right-handed alpha
Helix 71
AH8
A
1584 1601Right-handed alpha
Helix 72
AH9
A
1610 1614Right-handed 310
Helix 73
AI1
A
1617 1642Right-handed alpha
Helix 74
AI2
A
1659 1684Right-handed alpha
Helix 75
AI3
A
1687 1714Right-handed alpha
Helix 76
AI4
A
1747 1772Right-handed alpha
Helix 77
AI5
A
1773 1778Right-handed alpha
Helix 78
AI6
A
1782 1794Right-handed alpha
Helix 79
AI7
A
1805 1841Right-handed alpha
Helix 80
AI8
A
1853 1857Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 9LU8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 392first strand
Strand 2
A
395 398anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
797 800first strand
Strand 2
A
807 810anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1087 1090first strand
Strand 2
A
1065 1072anti-parallel
Strand 3
A
1048 1055anti-parallel
Strand 4
A
1017 1023parallel
Strand 5
A
861 867parallel
Strand 6
A
1116 1119parallel
Strand 7
A
1217 1219anti-parallel
Strand 8
A
1167 1171anti-parallel
Strand 9
A
1254 1257parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il