Analysis of interatomic Contacts of Structural Units in PDB entry:
9LUE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LUE entry

There are 7 chains in PDB entry 9LUE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	GLY 177	THR 602
L	GLU 1	LYS 103
A	GLN 1	SER 112
B	ASP 1	LEU 104
C	GLN 1	SER 113
D	GLU 1	ILE 106
H	GLU 1	SER 113

There are 9 helices in PDB entry 9LUE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	306	310	Right-handed 310
Helix 2	AA2	G	393	398	Right-handed alpha
Helix 3	AA3	L	79	83	Right-handed 310
Helix 4	AA4	A	61	64	Right-handed 310
Helix 5	AA5	A	83	87	Right-handed 310
Helix 6	AA6	C	83	86	Right-handed 310
Helix 7	AA7	D	79	83	Right-handed 310
Helix 8	AA8	H	28	32	Right-handed 310
Helix 9	AA9	H	83	87	Right-handed 310

There are 22 sheets in PDB entry 9LUE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	178	179	first strand
Strand 2	G	557	568	anti-parallel
Strand 3	G	571	581	anti-parallel
Strand 4	G	591	596	anti-parallel
Strand 5	G	200	203	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	215	225	first strand
Strand 2	G	228	237	anti-parallel
Strand 3	G	244	257	anti-parallel
Strand 4	G	263	271	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	279	287	first strand
Strand 2	G	290	297	anti-parallel
Strand 3	G	314	320	anti-parallel
Strand 4	G	332	335	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	339	341	first strand
Strand 2	G	425	430	parallel
Strand 3	G	407	417	anti-parallel
Strand 4	G	361	371	anti-parallel
Strand 5	G	347	350	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	339	341	first strand
Strand 2	G	425	430	parallel
Strand 3	G	407	417	anti-parallel
Strand 4	G	361	371	anti-parallel
Strand 5	G	356	358	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	442	447	first strand
Strand 2	G	450	455	anti-parallel
Strand 3	G	465	471	anti-parallel
Strand 4	G	476	479	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	512	515	first strand
Strand 2	G	520	526	anti-parallel
Strand 3	G	535	540	anti-parallel
Strand 4	G	545	550	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	29	anti-parallel
Strand 3	L	68	75	anti-parallel
Strand 4	L	63	66	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	17	25	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	107	111	parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	45	52	anti-parallel
Strand 6	A	57	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	107	111	parallel
Strand 3	A	88	95	anti-parallel
Strand 4	A	100	103	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	44	49	anti-parallel
Strand 3	B	33	38	anti-parallel
Strand 4	B	85	90	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	77	82	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	33	40	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	57	59	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	107	111	parallel
Strand 3	C	88	95	anti-parallel
Strand 4	C	102	103	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	45	49	anti-parallel
Strand 3	D	34	38	anti-parallel
Strand 4	D	85	89	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	59	first strand
Strand 2	H	45	52	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	96	anti-parallel
Strand 5	H	100	103	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	56	59	first strand
Strand 2	H	45	52	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	88	96	anti-parallel
Strand 5	H	107	109	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LUE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LUE