Analysis of interatomic Contacts of Structural Units in PDB entry:
9LUM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LUM entry

There are 2 chains in PDB entry 9LUM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 42THR 584
B
 ILE 10ALA 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9LUM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 50Right-handed alpha
Helix 2
AA2
A
55 57Right-handed 310
Helix 3
AA3
A
58 87Right-handed alpha
Helix 4
AA4
A
95 107Right-handed alpha
Helix 5
AA5
A
215 234Right-handed alpha
Helix 6
AA6
A
238 253Right-handed alpha
Helix 7
AA7
A
256 277Right-handed alpha
Helix 8
AA8
A
288 299Right-handed alpha
Helix 9
AA9
A
300 317Right-handed alpha
Helix 10
AB1
A
335 345Right-handed alpha
Helix 11
AB2
A
367 383Right-handed alpha
Helix 12
AB3
A
396 400Right-handed 310
Helix 13
AB4
A
422 428Right-handed 310
Helix 14
AB5
A
431 444Right-handed alpha
Helix 15
AB6
A
461 481Right-handed alpha
Helix 16
AB7
A
486 506Right-handed alpha
Helix 17
AB8
A
507 511Right-handed 310
Helix 18
AB9
A
517 529Right-handed alpha
Helix 19
AC1
A
536 551Right-handed alpha
Helix 20
AC2
B
11 15Right-handed 310
Helix 21
AC3
B
17 34Right-handed alpha
Helix 22
AC4
B
42 50Right-handed alpha
Helix 23
AC5
B
124 139Right-handed alpha
Helix 24
AC6
B
156 171Right-handed alpha
Helix 25
AC7
B
191 207Right-handed alpha
Helix 26
AC8
B
227 233Right-handed alpha
Helix 27
AC9
B
240 252Right-handed alpha
Helix 28
AD1
B
291 305Right-handed alpha
Helix 29
AD2
B
327 342Right-handed alpha
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There are 4 sheets in PDB entry 9LUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
B
63 71parallel
Strand 3
B
76 83anti-parallel
Strand 4
B
141 146anti-parallel
Strand 5
B
107 112parallel
Strand 6
B
184 190parallel
Strand 7
B
213 217parallel
Strand 8
B
280 286parallel
Strand 9
B
309 314parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 393first strand
Strand 2
A
352 359parallel
Strand 3
A
322 327parallel
Strand 4
A
414 420parallel
Strand 5
A
447 453parallel
Strand 6
A
572 582anti-parallel
Strand 7
A
530 532anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
387 393first strand
Strand 2
A
352 359parallel
Strand 3
A
322 327parallel
Strand 4
A
414 420parallel
Strand 5
A
447 453parallel
Strand 6
A
572 582anti-parallel
Strand 7
A
564 569anti-parallel
Strand 8
A
556 561anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 36first strand
Strand 2
B
40 41anti-parallel
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