Analysis of interatomic Contacts of Structural Units in PDB entry:
9LUT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LUT entry

There are 17 chains in PDB entry 9LUT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
6	SER 46	PRO 239
2	ARG 61	ALA 261
3	ARG 59	ILE 278
5	LYS 51	ALA 248
A	GLU 9	GLY 750
B	ALA 2	GLY 734
C	ALA 2	TYR 81
D	PHE 74	LEU 215
E	PRO 69	VAL 132
F	ASP 86	ARG 246
G	ASP 66	ASN 155
I	MET 1	ILE 35
J	MET 1	PHE 41
K	TYR 53	THR 132
M	SER 3	GLN 32
H	LEU 61	ILE 142
L	ASP 70	VAL 214

There are143 helices in PDB entry 9LUT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	6	76	107	Right-handed alpha
Helix 2	AA2	6	113	120	Right-handed 310
Helix 3	AA3	6	137	158	Right-handed alpha
Helix 4	AA4	6	161	167	Right-handed alpha
Helix 5	AA5	6	169	173	Right-handed 310
Helix 6	AA6	6	180	212	Right-handed alpha
Helix 7	AA7	6	216	227	Right-handed alpha
Helix 8	AA8	6	233	238	Right-handed alpha
Helix 9	AA9	2	92	127	Right-handed alpha
Helix 10	AB1	2	145	170	Right-handed alpha
Helix 11	AB2	2	194	199	Right-handed alpha
Helix 12	AB3	2	207	239	Right-handed alpha
Helix 13	AB4	2	242	253	Right-handed alpha
Helix 14	AB5	3	67	71	Right-handed 310
Helix 15	AB6	3	98	120	Right-handed alpha
Helix 16	AB7	3	121	129	Right-handed alpha
Helix 17	AB8	3	139	143	Right-handed 310
Helix 18	AB9	3	157	182	Right-handed alpha
Helix 19	AC1	3	184	188	Right-handed 310
Helix 20	AC2	3	193	197	Right-handed 310
Helix 21	AC3	3	208	213	Right-handed alpha
Helix 22	AC4	3	220	253	Right-handed alpha
Helix 23	AC5	3	255	266	Right-handed alpha
Helix 24	AC6	5	82	117	Right-handed alpha
Helix 25	AC7	5	135	160	Right-handed alpha
Helix 26	AC8	5	184	188	Right-handed 310
Helix 27	AC9	5	195	223	Right-handed alpha
Helix 28	AD1	5	226	237	Right-handed alpha
Helix 29	AD2	5	242	248	Right-handed alpha
Helix 30	AD3	A	35	39	Right-handed 310
Helix 31	AD4	A	43	52	Right-handed alpha
Helix 32	AD5	A	55	60	Right-handed alpha
Helix 33	AD6	A	62	95	Right-handed alpha
Helix 34	AD7	A	97	104	Right-handed alpha
Helix 35	AD8	A	120	125	Right-handed 310
Helix 36	AD9	A	140	149	Right-handed alpha
Helix 37	AE1	A	152	180	Right-handed alpha
Helix 38	AE2	A	184	189	Right-handed alpha
Helix 39	AE3	A	190	201	Right-handed alpha
Helix 40	AE4	A	202	217	Right-handed alpha
Helix 41	AE5	A	217	227	Right-handed alpha
Helix 42	AE6	A	236	243	Right-handed alpha
Helix 43	AE7	A	243	251	Right-handed alpha
Helix 44	AE8	A	252	257	Right-handed 310
Helix 45	AE9	A	258	263	Right-handed alpha
Helix 46	AF1	A	265	272	Right-handed 310
Helix 47	AF2	A	287	306	Right-handed alpha
Helix 48	AF3	A	318	326	Right-handed alpha
Helix 49	AF4	A	337	345	Right-handed alpha
Helix 50	AF5	A	345	371	Right-handed alpha
Helix 51	AF6	A	380	413	Right-handed alpha
Helix 52	AF7	A	422	429	Right-handed alpha
Helix 53	AF8	A	430	462	Right-handed alpha
Helix 54	AF9	A	464	468	Right-handed 310
Helix 55	AG1	A	478	490	Right-handed alpha
Helix 56	AG2	A	490	495	Right-handed alpha
Helix 57	AG3	A	527	554	Right-handed alpha
Helix 58	AG4	A	563	568	Right-handed alpha
Helix 59	AG5	A	585	616	Right-handed alpha
Helix 60	AG6	A	633	638	Right-handed alpha
Helix 61	AG7	A	640	647	Right-handed alpha
Helix 62	AG8	A	648	653	Right-handed alpha
Helix 63	AG9	A	653	658	Right-handed alpha
Helix 64	AH1	A	664	687	Right-handed alpha
Helix 65	AH2	A	688	706	Right-handed alpha
Helix 66	AH3	A	718	750	Right-handed alpha
Helix 67	AH4	B	9	14	Right-handed alpha
Helix 68	AH5	B	18	27	Right-handed alpha
Helix 69	AH6	B	30	34	Right-handed 310
Helix 70	AH7	B	38	72	Right-handed alpha
Helix 71	AH8	B	73	80	Right-handed alpha
Helix 72	AH9	B	97	105	Right-handed alpha
Helix 73	AI1	B	119	127	Right-handed alpha
Helix 74	AI2	B	131	156	Right-handed alpha
Helix 75	AI3	B	164	169	Right-handed alpha
Helix 76	AI4	B	170	181	Right-handed alpha
Helix 77	AI5	B	183	197	Right-handed alpha
Helix 78	AI6	B	197	203	Right-handed alpha
Helix 79	AI7	B	222	228	Right-handed alpha
Helix 80	AI8	B	229	235	Right-handed 310
Helix 81	AI9	B	269	288	Right-handed alpha
Helix 82	AJ1	B	300	308	Right-handed alpha
Helix 83	AJ2	B	321	328	Right-handed alpha
Helix 84	AJ3	B	329	355	Right-handed alpha
Helix 85	AJ4	B	364	397	Right-handed alpha
Helix 86	AJ5	B	406	414	Right-handed alpha
Helix 87	AJ6	B	414	446	Right-handed alpha
Helix 88	AJ7	B	448	452	Right-handed 310
Helix 89	AJ8	B	457	467	Right-handed alpha
Helix 90	AJ9	B	483	490	Right-handed alpha
Helix 91	AK1	B	493	502	Right-handed alpha
Helix 92	AK2	B	513	540	Right-handed alpha
Helix 93	AK3	B	549	554	Right-handed 310
Helix 94	AK4	B	571	603	Right-handed alpha
Helix 95	AK5	B	605	613	Right-handed alpha
Helix 96	AK6	B	615	624	Right-handed alpha
Helix 97	AK7	B	625	627	Right-handed 310
Helix 98	AK8	B	628	633	Right-handed alpha
Helix 99	AK9	B	643	666	Right-handed alpha
Helix 100	AL1	B	667	685	Right-handed alpha
Helix 101	AL2	B	701	733	Right-handed alpha
Helix 102	AL3	C	15	21	Right-handed alpha
Helix 103	AL4	C	44	48	Right-handed 310
Helix 104	AL5	C	52	58	Right-handed alpha
Helix 105	AL6	D	96	102	Right-handed alpha
Helix 106	AL7	D	138	153	Right-handed alpha
Helix 107	AL8	D	195	199	Right-handed 310
Helix 108	AL9	D	211	215	Right-handed 310
Helix 109	AM1	E	125	127	Right-handed 310
Helix 110	AM2	F	86	90	Right-handed 310
Helix 111	AM3	F	96	113	Right-handed alpha
Helix 112	AM4	F	114	117	Right-handed 310
Helix 113	AM5	F	121	144	Right-handed alpha
Helix 114	AM6	F	161	163	Right-handed 310
Helix 115	AM7	F	164	193	Right-handed alpha
Helix 116	AM8	F	200	205	Right-handed alpha
Helix 117	AM9	F	207	215	Right-handed alpha
Helix 118	AN1	F	216	219	Right-handed 310
Helix 119	AN2	F	220	231	Right-handed alpha
Helix 120	AN3	F	237	241	Right-handed 310
Helix 121	AN4	G	67	85	Right-handed alpha
Helix 122	AN5	G	86	98	Right-handed alpha
Helix 123	AN6	G	107	111	Right-handed alpha
Helix 124	AN7	G	112	116	Right-handed 310
Helix 125	AN8	G	131	154	Right-handed alpha
Helix 126	AN9	I	6	31	Right-handed alpha
Helix 127	AO1	J	2	9	Right-handed alpha
Helix 128	AO2	J	10	33	Right-handed alpha
Helix 129	AO3	K	56	75	Right-handed alpha
Helix 130	AO4	K	87	89	Right-handed 310
Helix 131	AO5	K	107	132	Right-handed alpha
Helix 132	AO6	M	5	32	Right-handed alpha
Helix 133	AO7	H	62	66	Right-handed alpha
Helix 134	AO8	H	80	90	Right-handed alpha
Helix 135	AO9	H	91	95	Right-handed 310
Helix 136	AP1	H	96	118	Right-handed alpha
Helix 137	AP2	H	124	129	Right-handed alpha
Helix 138	AP3	L	83	92	Right-handed alpha
Helix 139	AP4	L	93	97	Right-handed 310
Helix 140	AP5	L	101	125	Right-handed alpha
Helix 141	AP6	L	132	160	Right-handed alpha
Helix 142	AP7	L	181	184	Right-handed 310
Helix 143	AP8	L	185	213	Right-handed alpha

There are 15 sheets in PDB entry 9LUT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	127	128	first strand
Strand 2	6	131	132	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	181	183	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	133	136	anti-parallel
Strand 3	A	126	127	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	513	514	first strand
Strand 2	A	519	521	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	620	first strand
Strand 2	A	626	628	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	68	first strand
Strand 2	C	4	8	anti-parallel
Strand 3	D	191	192	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	136	first strand
Strand 2	D	104	111	anti-parallel
Strand 3	D	157	162	anti-parallel
Strand 4	D	168	170	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	118	first strand
Strand 2	D	124	127	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	124	first strand
Strand 2	E	107	110	anti-parallel
Strand 3	E	91	97	anti-parallel
Strand 4	E	77	80	anti-parallel
Strand 5	E	129	131	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	92	first strand
Strand 2	F	147	148	anti-parallel
Strand 3	F	154	155	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	102	first strand
Strand 2	G	105	106	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	84	86	first strand
Strand 2	K	90	92	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LUT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LUT