Analysis of interatomic Contacts of Structural Units in PDB entry:
9LUY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LUY entry

There is 1 chain in PDB entry 9LUY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2SER 273
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9LUY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 13Right-handed 310
Helix 2
AA2
A
113 117Right-handed 310
Helix 3
AA3
A
183 187Right-handed 310
Helix 4
AA4
A
242 246Right-handed 310
Helix 5
AA5
A
256 258Right-handed 310
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There are 7 sheets in PDB entry 9LUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
49 55anti-parallel
Strand 3
A
104 109anti-parallel
Strand 4
A
96 101anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
135 139parallel
Strand 3
A
118 124anti-parallel
Strand 4
A
67 72anti-parallel
Strand 5
A
79 83anti-parallel
Strand 6
A
87 88anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
135 139parallel
Strand 3
A
118 124anti-parallel
Strand 4
A
130 131anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
64 65anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
267 271parallel
Strand 3
A
247 254anti-parallel
Strand 4
A
189 194anti-parallel
Strand 5
A
200 206anti-parallel
Strand 6
A
213 214anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
267 271parallel
Strand 3
A
247 254anti-parallel
Strand 4
A
260 263anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 178first strand
Strand 2
A
233 238anti-parallel
Strand 3
A
223 228anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il