Analysis of interatomic Contacts of Structural Units in PDB entry:
9LV6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LV6 entry

There are 6 chains in PDB entry 9LV6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
P
 A 1 T 4
R
 C 141 U 260
A
 MET 1LYS 425
C
 G 1 T 5
D
 C 141 U 260
B
 MET 1LYS 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 9LV6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 6Right-handed 310
Helix 2
AA2
A
22 31Right-handed alpha
Helix 3
AA3
A
32 39Right-handed alpha
Helix 4
AA4
A
76 101Right-handed alpha
Helix 5
AA5
A
116 132Right-handed alpha
Helix 6
AA6
A
149 162Right-handed alpha
Helix 7
AA7
A
167 179Right-handed alpha
Helix 8
AA8
A
185 192Right-handed alpha
Helix 9
AA9
A
208 216Right-handed alpha
Helix 10
AB1
A
237 246Right-handed alpha
Helix 11
AB2
A
246 260Right-handed alpha
Helix 12
AB3
A
276 280Right-handed 310
Helix 13
AB4
A
282 291Right-handed alpha
Helix 14
AB5
A
292 295Right-handed 310
Helix 15
AB6
A
336 368Right-handed alpha
Helix 16
AB7
A
378 385Right-handed alpha
Helix 17
AB8
A
391 404Right-handed alpha
Helix 18
AB9
A
405 413Right-handed alpha
Helix 19
AC1
A
414 425Right-handed alpha
Helix 20
AC2
B
22 31Right-handed alpha
Helix 21
AC3
B
32 38Right-handed alpha
Helix 22
AC4
B
76 101Right-handed alpha
Helix 23
AC5
B
116 132Right-handed alpha
Helix 24
AC6
B
144 148Right-handed 310
Helix 25
AC7
B
149 162Right-handed alpha
Helix 26
AC8
B
167 179Right-handed alpha
Helix 27
AC9
B
185 193Right-handed alpha
Helix 28
AD1
B
208 216Right-handed alpha
Helix 29
AD2
B
237 246Right-handed alpha
Helix 30
AD3
B
246 260Right-handed alpha
Helix 31
AD4
B
276 280Right-handed 310
Helix 32
AD5
B
282 291Right-handed alpha
Helix 33
AD6
B
292 295Right-handed 310
Helix 34
AD7
B
299 303Right-handed 310
Helix 35
AD8
B
336 368Right-handed alpha
Helix 36
AD9
B
377 384Right-handed alpha
Helix 37
AE1
B
391 403Right-handed alpha
Helix 38
AE2
B
405 413Right-handed alpha
Helix 39
AE3
B
414 425Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 9LV6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 74first strand
Strand 2
A
44 54anti-parallel
Strand 3
A
181 184parallel
Strand 4
A
222 224anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
263 267first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
135 140anti-parallel
Strand 4
A
304 311anti-parallel
Strand 5
A
314 317anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 323first strand
Strand 2
A
326 328anti-parallel
Strand 3
A
333 335anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 74first strand
Strand 2
B
44 54anti-parallel
Strand 3
B
181 184parallel
Strand 4
B
223 224anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 267first strand
Strand 2
B
270 275anti-parallel
Strand 3
B
134 140anti-parallel
Strand 4
B
304 311anti-parallel
Strand 5
B
314 317anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 322first strand
Strand 2
B
326 328anti-parallel
Strand 3
B
333 335anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il