Analysis of interatomic Contacts of Structural Units in PDB entry:
9LVB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LVB entry

There are 4 chains in PDB entry 9LVB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 45CYS 573
H
 GLU 4LYS 228
L
 ASP 2ARG 213
N
 GLN 1THR 118
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9LVB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 75Right-handed alpha
Helix 2
AA2
A
75 112Right-handed alpha
Helix 3
AA3
A
116 136Right-handed alpha
Helix 4
AA4
A
138 158Right-handed alpha
Helix 5
AA5
A
171 197Right-handed alpha
Helix 6
AA6
A
199 222Right-handed alpha
Helix 7
AA7
A
227 234Right-handed alpha
Helix 8
AA8
A
237 268Right-handed alpha
Helix 9
AA9
A
275 290Right-handed alpha
Helix 10
AB1
A
299 323Right-handed alpha
Helix 11
AB2
A
339 350Right-handed alpha
Helix 12
AB3
A
353 358Right-handed alpha
Helix 13
AB4
A
377 398Right-handed alpha
Helix 14
AB5
A
399 402Right-handed 310
Helix 15
AB6
A
407 411Right-handed 310
Helix 16
AB7
A
414 448Right-handed alpha
Helix 17
AB8
A
462 464Right-handed 310
Helix 18
AB9
A
465 474Right-handed alpha
Helix 19
AC1
A
480 490Right-handed alpha
Helix 20
AC2
A
490 495Right-handed alpha
Helix 21
AC3
A
496 507Right-handed alpha
Helix 22
AC4
A
508 509Right-handed 310
Helix 23
AC5
A
510 515Right-handed 310
Helix 24
AC6
A
529 565Right-handed alpha
Helix 25
AC7
H
65 68Right-handed 310
Helix 26
AC8
H
90 94Right-handed 310
Helix 27
AC9
H
107 112Right-handed alpha
Helix 28
AD1
H
199 203Right-handed 310
Helix 29
AD2
L
80 84Right-handed 310
Helix 30
AD3
L
123 130Right-handed alpha
Helix 31
AD4
L
186 190Right-handed 310
Helix 32
AD5
N
87 91Right-handed 310
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There are 15 sheets in PDB entry 9LVB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
8 10first strand
Strand 2
H
24 26anti-parallel
Strand 3
H
81 82anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
14 15first strand
Strand 2
H
124 125parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
20 22first strand
Strand 2
H
85 87anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
62 63first strand
Strand 2
H
48 55anti-parallel
Strand 3
H
36 42anti-parallel
Strand 4
H
96 100anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
134 138first strand
Strand 2
H
150 159anti-parallel
Strand 3
H
190 198anti-parallel
Strand 4
H
178 179anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
134 138first strand
Strand 2
H
150 159anti-parallel
Strand 3
H
190 198anti-parallel
Strand 4
H
183 184anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
164 168first strand
Strand 2
H
208 214anti-parallel
Strand 3
H
221 225anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 6first strand
Strand 2
L
20 26anti-parallel
Strand 3
L
71 76anti-parallel
Strand 4
L
63 68anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
47 50first strand
Strand 2
L
34 39anti-parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
99 100anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
116 120first strand
Strand 2
L
131 141anti-parallel
Strand 3
L
175 184anti-parallel
Strand 4
L
161 162anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
146 148first strand
Strand 2
L
198 200anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
151 152first strand
Strand 2
L
194 195anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
5 7first strand
Strand 2
N
21 23anti-parallel
Strand 3
N
78 82anti-parallel
Strand 4
N
69 71anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
46 51first strand
Strand 2
N
34 39anti-parallel
Strand 3
N
92 99anti-parallel
Strand 4
N
108 111anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
46 51first strand
Strand 2
N
34 39anti-parallel
Strand 3
N
92 99anti-parallel
Strand 4
N
116 117anti-parallel
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