Analysis of interatomic Contacts of Structural Units in PDB entry:
9LW0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LW0 entry

There is 1 chain in PDB entry 9LW0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11ARG 417
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9LW0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 19Right-handed alpha
Helix 2
AA2
A
22 28Right-handed alpha
Helix 3
AA3
A
29 37Right-handed alpha
Helix 4
AA4
A
38 40Right-handed 310
Helix 5
AA5
A
67 77Right-handed alpha
Helix 6
AA6
A
104 117Right-handed alpha
Helix 7
AA7
A
118 124Right-handed alpha
Helix 8
AA8
A
125 139Right-handed alpha
Helix 9
AA9
A
147 151Right-handed alpha
Helix 10
AB1
A
154 164Right-handed alpha
Helix 11
AB2
A
167 169Right-handed 310
Helix 12
AB3
A
170 181Right-handed alpha
Helix 13
AB4
A
188 216Right-handed alpha
Helix 14
AB5
A
223 231Right-handed alpha
Helix 15
AB6
A
239 253Right-handed alpha
Helix 16
AB7
A
254 272Right-handed alpha
Helix 17
AB8
A
272 282Right-handed alpha
Helix 18
AB9
A
285 298Right-handed alpha
Helix 19
AC1
A
327 333Right-handed alpha
Helix 20
AC2
A
350 354Right-handed 310
Helix 21
AC3
A
366 384Right-handed alpha
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There are 4 sheets in PDB entry 9LW0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 47first strand
Strand 2
A
60 65anti-parallel
Strand 3
A
323 326parallel
Strand 4
A
303 307anti-parallel
Strand 5
A
81 82anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
411 416anti-parallel
Strand 3
A
385 390anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 313first strand
Strand 2
A
316 318anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 397first strand
Strand 2
A
407 409anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il