Analysis of interatomic Contacts of Structural Units in PDB entry:
9LW9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LW9 entry

There are 4 chains in PDB entry 9LW9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 43	PRO 445
B	PRO 43	PRO 445
C	GLU 3	PRO 182
D	GLU 3	PRO 182

There are 49 helices in PDB entry 9LW9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	59	68	Right-handed alpha
Helix 2	AA2	A	72	87	Right-handed alpha
Helix 3	AA3	A	107	109	Right-handed 310
Helix 4	AA4	A	110	115	Right-handed alpha
Helix 5	AA5	A	121	137	Right-handed alpha
Helix 6	AA6	A	152	154	Right-handed 310
Helix 7	AA7	A	190	194	Right-handed 310
Helix 8	AA8	A	224	226	Right-handed 310
Helix 9	AA9	A	227	248	Right-handed alpha
Helix 10	AB1	A	262	277	Right-handed alpha
Helix 11	AB2	A	301	305	Right-handed 310
Helix 12	AB3	A	307	323	Right-handed alpha
Helix 13	AB4	A	325	330	Right-handed alpha
Helix 14	AB5	A	339	341	Right-handed 310
Helix 15	AB6	A	342	367	Right-handed alpha
Helix 16	AB7	A	386	388	Right-handed 310
Helix 17	AB8	A	389	413	Right-handed alpha
Helix 18	AB9	A	416	427	Right-handed alpha
Helix 19	AC1	A	428	432	Right-handed 310
Helix 20	AC2	B	59	68	Right-handed alpha
Helix 21	AC3	B	72	86	Right-handed alpha
Helix 22	AC4	B	107	109	Right-handed 310
Helix 23	AC5	B	110	115	Right-handed alpha
Helix 24	AC6	B	121	136	Right-handed alpha
Helix 25	AC7	B	224	226	Right-handed 310
Helix 26	AC8	B	227	243	Right-handed alpha
Helix 27	AC9	B	243	248	Right-handed alpha
Helix 28	AD1	B	262	277	Right-handed alpha
Helix 29	AD2	B	301	305	Right-handed 310
Helix 30	AD3	B	307	323	Right-handed alpha
Helix 31	AD4	B	325	330	Right-handed alpha
Helix 32	AD5	B	342	368	Right-handed alpha
Helix 33	AD6	B	389	413	Right-handed alpha
Helix 34	AD7	B	416	427	Right-handed alpha
Helix 35	AD8	B	428	432	Right-handed 310
Helix 36	AD9	C	5	9	Right-handed 310
Helix 37	AE1	C	10	15	Right-handed alpha
Helix 38	AE2	C	19	39	Right-handed alpha
Helix 39	AE3	C	82	86	Right-handed 310
Helix 40	AE4	C	123	139	Right-handed alpha
Helix 41	AE5	C	165	174	Right-handed alpha
Helix 42	AE6	C	175	177	Right-handed 310
Helix 43	AE7	D	5	9	Right-handed 310
Helix 44	AE8	D	10	15	Right-handed alpha
Helix 45	AE9	D	19	39	Right-handed alpha
Helix 46	AF1	D	82	86	Right-handed 310
Helix 47	AF2	D	123	139	Right-handed alpha
Helix 48	AF3	D	165	171	Right-handed alpha
Helix 49	AF4	D	172	177	Right-handed 310

There are 13 sheets in PDB entry 9LW9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	51	55	anti-parallel
Strand 3	A	156	164	anti-parallel
Strand 4	A	176	186	anti-parallel
Strand 5	A	198	199	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	105	first strand
Strand 2	A	90	97	anti-parallel
Strand 3	A	378	382	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	151	first strand
Strand 2	A	140	143	anti-parallel
Strand 3	A	205	207	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	256	first strand
Strand 2	A	294	297	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	289	first strand
Strand 2	B	251	256	parallel
Strand 3	B	294	297	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	51	55	anti-parallel
Strand 3	B	156	164	anti-parallel
Strand 4	B	176	186	anti-parallel
Strand 5	B	198	201	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	90	97	anti-parallel
Strand 3	B	377	382	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	151	first strand
Strand 2	B	140	144	anti-parallel
Strand 3	B	205	207	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	53	first strand
Strand 2	C	109	115	anti-parallel
Strand 3	C	68	76	anti-parallel
Strand 4	C	79	80	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	94	96	anti-parallel
Strand 3	C	87	89	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	156	first strand
Strand 2	C	149	151	anti-parallel
Strand 3	D	154	156	anti-parallel
Strand 4	D	149	151	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	53	first strand
Strand 2	D	109	115	anti-parallel
Strand 3	D	68	76	anti-parallel
Strand 4	D	79	80	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	62	first strand
Strand 2	D	94	96	anti-parallel
Strand 3	D	87	89	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LW9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LW9