Analysis of interatomic Contacts of Structural Units in PDB entry:
9LWA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LWA entry

There are 3 chains in PDB entry 9LWA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 3ALA 130
B
 ASP 5PRO 140
C
 LEU 5ALA 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 9LWA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
68 73Right-handed alpha
Helix 3
AA3
A
95 101Right-handed alpha
Helix 4
AA4
B
13 23Right-handed alpha
Helix 5
AA5
B
69 91Right-handed alpha
Helix 6
AA6
C
9 14Right-handed alpha
Helix 7
AA7
C
19 23Right-handed 310
Helix 8
AA8
C
39 44Right-handed 310
Helix 9
AA9
C
141 149Right-handed alpha
Helix 10
AB1
C
254 259Right-handed alpha
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There are 10 sheets in PDB entry 9LWA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 18first strand
Strand 2
A
28 48anti-parallel
Strand 3
A
57 65anti-parallel
Strand 4
A
119 129anti-parallel
Strand 5
A
102 113anti-parallel
Strand 6
A
79 81anti-parallel
Strand 7
A
8 18anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
137 138anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 29first strand
Strand 2
B
40 47parallel
Strand 3
B
60 68anti-parallel
Strand 4
B
123 133anti-parallel
Strand 5
B
106 116anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
56 57anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 95first strand
Strand 2
B
101 102anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 91first strand
Strand 2
C
30 37anti-parallel
Strand 3
C
182 192anti-parallel
Strand 4
C
195 210anti-parallel
Strand 5
C
224 229anti-parallel
Strand 6
C
132 135anti-parallel
Strand 7
C
102 103anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 91first strand
Strand 2
C
30 37anti-parallel
Strand 3
C
182 192anti-parallel
Strand 4
C
195 210anti-parallel
Strand 5
C
248 253anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 75first strand
Strand 2
C
78 81anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 112first strand
Strand 2
C
122 129anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
236 238first strand
Strand 2
C
243 245anti-parallel
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