Analysis of interatomic Contacts of Structural Units in PDB entry:
9LWG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9LWG entry

There are 2 chains in PDB entry 9LWG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 51	GLN 662
B	ALA 51	GLN 662

There are 28 helices in PDB entry 9LWG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	94	103	Right-handed alpha
Helix 2	AA2	A	103	114	Right-handed alpha
Helix 3	AA3	A	128	145	Right-handed alpha
Helix 4	AA4	A	149	153	Right-handed 310
Helix 5	AA5	A	163	165	Right-handed 310
Helix 6	AA6	A	168	176	Right-handed alpha
Helix 7	AA7	A	248	259	Right-handed alpha
Helix 8	AA8	A	281	286	Right-handed alpha
Helix 9	AA9	A	298	308	Right-handed alpha
Helix 10	AB1	A	344	365	Right-handed alpha
Helix 11	AB2	A	413	417	Right-handed 310
Helix 12	AB3	A	460	466	Right-handed 310
Helix 13	AB4	A	519	523	Right-handed 310
Helix 14	AB5	A	582	588	Right-handed 310
Helix 15	AB6	B	94	103	Right-handed alpha
Helix 16	AB7	B	103	114	Right-handed alpha
Helix 17	AB8	B	128	145	Right-handed alpha
Helix 18	AB9	B	149	153	Right-handed 310
Helix 19	AC1	B	163	165	Right-handed 310
Helix 20	AC2	B	168	176	Right-handed alpha
Helix 21	AC3	B	248	259	Right-handed alpha
Helix 22	AC4	B	281	286	Right-handed alpha
Helix 23	AC5	B	298	308	Right-handed alpha
Helix 24	AC6	B	344	365	Right-handed alpha
Helix 25	AC7	B	413	417	Right-handed 310
Helix 26	AC8	B	460	466	Right-handed 310
Helix 27	AC9	B	519	523	Right-handed 310
Helix 28	AD1	B	582	588	Right-handed 310

There are 14 sheets in PDB entry 9LWG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	68	first strand
Strand 2	A	71	75	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	161	first strand
Strand 2	A	118	124	parallel
Strand 3	A	84	90	parallel
Strand 4	A	324	327	anti-parallel
Strand 5	A	333	334	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	312	318	anti-parallel
Strand 3	A	185	191	anti-parallel
Strand 4	A	199	205	anti-parallel
Strand 5	A	292	295	anti-parallel
Strand 6	A	264	267	parallel
Strand 7	A	240	243	parallel
Strand 8	A	223	224	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	369	379	first strand
Strand 2	A	484	493	anti-parallel
Strand 3	A	400	408	anti-parallel
Strand 4	A	455	458	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	385	390	first strand
Strand 2	A	470	477	anti-parallel
Strand 3	A	423	429	anti-parallel
Strand 4	A	439	445	anti-parallel
Strand 5	A	611	612	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	503	515	first strand
Strand 2	A	650	661	anti-parallel
Strand 3	A	536	546	anti-parallel
Strand 4	A	616	619	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	529	first strand
Strand 2	A	629	638	anti-parallel
Strand 3	A	559	565	anti-parallel
Strand 4	A	572	574	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	71	75	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	161	first strand
Strand 2	B	118	124	parallel
Strand 3	B	84	90	parallel
Strand 4	B	324	327	anti-parallel
Strand 5	B	333	334	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	221	first strand
Strand 2	B	312	318	anti-parallel
Strand 3	B	185	191	anti-parallel
Strand 4	B	199	205	anti-parallel
Strand 5	B	292	295	anti-parallel
Strand 6	B	264	267	parallel
Strand 7	B	240	243	parallel
Strand 8	B	223	224	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	379	first strand
Strand 2	B	484	493	anti-parallel
Strand 3	B	400	408	anti-parallel
Strand 4	B	455	458	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	385	390	first strand
Strand 2	B	470	477	anti-parallel
Strand 3	B	423	429	anti-parallel
Strand 4	B	439	445	anti-parallel
Strand 5	B	611	612	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	503	515	first strand
Strand 2	B	650	661	anti-parallel
Strand 3	B	536	546	anti-parallel
Strand 4	B	616	619	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	529	first strand
Strand 2	B	629	638	anti-parallel
Strand 3	B	559	565	anti-parallel
Strand 4	B	572	574	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9LWG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9LWG