Analysis of interatomic Contacts of Structural Units in PDB entry:
9LWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9LWS entry

There are 2 chains in PDB entry 9LWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 18GLY 1050
B
 MET 326THR 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 9LWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 56Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
88 93Right-handed alpha
Helix 4
AA4
A
107 122Right-handed alpha
Helix 5
AA5
A
124 131Right-handed alpha
Helix 6
AA6
A
133 155Right-handed alpha
Helix 7
AA7
A
159 167Right-handed alpha
Helix 8
AA8
A
178 185Right-handed alpha
Helix 9
AA9
A
216 229Right-handed alpha
Helix 10
AB1
A
266 269Right-handed 310
Helix 11
AB2
A
270 280Right-handed alpha
Helix 12
AB3
A
290 297Right-handed alpha
Helix 13
AB4
A
305 309Right-handed 310
Helix 14
AB5
A
488 496Right-handed alpha
Helix 15
AB6
A
525 536Right-handed alpha
Helix 16
AB7
A
544 554Right-handed alpha
Helix 17
AB8
A
554 559Right-handed alpha
Helix 18
AB9
A
560 563Right-handed 310
Helix 19
AC1
A
564 572Right-handed alpha
Helix 20
AC2
A
577 589Right-handed alpha
Helix 21
AC3
A
608 623Right-handed alpha
Helix 22
AC4
A
624 629Right-handed alpha
Helix 23
AC5
A
631 640Right-handed alpha
Helix 24
AC6
A
647 658Right-handed alpha
Helix 25
AC7
A
660 674Right-handed alpha
Helix 26
AC8
A
680 695Right-handed alpha
Helix 27
AC9
A
697 722Right-handed alpha
Helix 28
AD1
A
727 740Right-handed alpha
Helix 29
AD2
A
741 749Right-handed alpha
Helix 30
AD3
A
789 794Right-handed alpha
Helix 31
AD4
A
807 828Right-handed alpha
Helix 32
AD5
A
857 863Right-handed alpha
Helix 33
AD6
A
875 885Right-handed alpha
Helix 34
AD7
A
888 911Right-handed alpha
Helix 35
AD8
A
917 919Right-handed 310
Helix 36
AD9
A
957 965Right-handed alpha
Helix 37
AE1
A
974 994Right-handed alpha
Helix 38
AE2
A
994 1004Right-handed alpha
Helix 39
AE3
A
1010 1014Right-handed 310
Helix 40
AE4
A
1020 1025Right-handed alpha
Helix 41
AE5
A
1031 1048Right-handed alpha
Helix 42
AE6
B
341 348Right-handed alpha
Helix 43
AE7
B
400 411Right-handed alpha
Helix 44
AE8
B
442 509Right-handed alpha
Helix 45
AE9
B
518 523Right-handed alpha
Helix 46
AF1
B
523 582Right-handed alpha
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There are 10 sheets in PDB entry 9LWS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
22 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 73anti-parallel
Strand 5
A
79 80anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 212first strand
Strand 2
A
189 196anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
Strand 5
A
260 261anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
484 485parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 392first strand
Strand 2
A
333 341anti-parallel
Strand 3
A
472 477anti-parallel
Strand 4
A
439 444anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 377first strand
Strand 2
A
353 358anti-parallel
Strand 3
A
404 409anti-parallel
Strand 4
A
421 425anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
365 366anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
770 771first strand
Strand 2
A
779 784anti-parallel
Strand 3
A
796 803anti-parallel
Strand 4
A
845 849anti-parallel
Strand 5
A
838 840anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
855 856first strand
Strand 2
A
921 923anti-parallel
Strand 3
A
929 931anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
377 382first strand
Strand 2
B
369 374anti-parallel
Strand 3
B
354 358anti-parallel
Strand 4
B
426 427parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 386first strand
Strand 2
B
389 391anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il